miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22877 5' -54.5 NC_005137.2 + 12693 0.66 0.92919
Target:  5'- -aGCA-GCGCgucggaaCGGCGCGC-CAACa -3'
miRNA:   3'- caUGUaCGCGaag----GCUGCGCGcGUUG- -5'
22877 5' -54.5 NC_005137.2 + 104107 0.66 0.927569
Target:  5'- uGUGCGgggGCGCUcuuucaccacgcuuUCCGGuuUGCGCcugauGCAGCg -3'
miRNA:   3'- -CAUGUa--CGCGA--------------AGGCU--GCGCG-----CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 75258 0.66 0.921433
Target:  5'- -cGCggGCGCUugaaauccacguucUCCGGCuguaacgGCGgGCAACg -3'
miRNA:   3'- caUGuaCGCGA--------------AGGCUG-------CGCgCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 84324 0.66 0.917957
Target:  5'- -cGCGUGCGagcauaCUGGCGCGUGCu-- -3'
miRNA:   3'- caUGUACGCgaa---GGCUGCGCGCGuug -5'
22877 5' -54.5 NC_005137.2 + 109361 0.66 0.917957
Target:  5'- cGUGCAUGCaggaaaUGGCGuUGCGCAACa -3'
miRNA:   3'- -CAUGUACGcgaag-GCUGC-GCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 130316 0.66 0.917957
Target:  5'- -cGCAaagGCGCUaCCGAuCGCaGCGCGu- -3'
miRNA:   3'- caUGUa--CGCGAaGGCU-GCG-CGCGUug -5'
22877 5' -54.5 NC_005137.2 + 42499 0.66 0.917957
Target:  5'- -cACAcgGCGCUUgCuGCGCG-GCGACa -3'
miRNA:   3'- caUGUa-CGCGAAgGcUGCGCgCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 87175 0.66 0.905717
Target:  5'- cGUGCAaauCGCgUUCGACGgGCGCGGg -3'
miRNA:   3'- -CAUGUac-GCGaAGGCUGCgCGCGUUg -5'
22877 5' -54.5 NC_005137.2 + 55030 0.66 0.905717
Target:  5'- --cCGUGCGCcgugcaCCaACGCGCGCcGCg -3'
miRNA:   3'- cauGUACGCGaa----GGcUGCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 97806 0.66 0.905717
Target:  5'- -cGCgGUGCGCUcUUCGACGCGCa---- -3'
miRNA:   3'- caUG-UACGCGA-AGGCUGCGCGcguug -5'
22877 5' -54.5 NC_005137.2 + 68662 0.66 0.905717
Target:  5'- -aACGUGCGC-----ACGCGCGUGGCg -3'
miRNA:   3'- caUGUACGCGaaggcUGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 100067 0.66 0.905717
Target:  5'- -aGCAUGCuuUgugCCG-CgGCGCGCGGCa -3'
miRNA:   3'- caUGUACGcgAa--GGCuG-CGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 142 0.66 0.903795
Target:  5'- cGUACAauucaggcgcgggcUGCGCgUCCaACGCGUucuuagGCAACg -3'
miRNA:   3'- -CAUGU--------------ACGCGaAGGcUGCGCG------CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 71982 0.66 0.899224
Target:  5'- cGUACAUGCGCguagCGcACG-GCGaCAACa -3'
miRNA:   3'- -CAUGUACGCGaag-GC-UGCgCGC-GUUG- -5'
22877 5' -54.5 NC_005137.2 + 1544 0.66 0.899224
Target:  5'- -cGCAUGCGCauuaaCGugGCaaaaugGCGCGAUg -3'
miRNA:   3'- caUGUACGCGaag--GCugCG------CGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 72798 0.66 0.899224
Target:  5'- -----cGCGUUggCGGCGCGCGCuGCc -3'
miRNA:   3'- cauguaCGCGAagGCUGCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 74476 0.67 0.892485
Target:  5'- --cCGUGCGUUUguaCGGCGCGUuuGCGGCc -3'
miRNA:   3'- cauGUACGCGAAg--GCUGCGCG--CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 68759 0.67 0.892485
Target:  5'- cGUugGUGcCGCUUgUGugGCGCGaaAACc -3'
miRNA:   3'- -CAugUAC-GCGAAgGCugCGCGCg-UUG- -5'
22877 5' -54.5 NC_005137.2 + 62607 0.67 0.892485
Target:  5'- cGUACAagucgaUGUGCUcggCCGACGCGUccGUAGa -3'
miRNA:   3'- -CAUGU------ACGCGAa--GGCUGCGCG--CGUUg -5'
22877 5' -54.5 NC_005137.2 + 99363 0.67 0.870841
Target:  5'- -aGCGUGguCGCgUCCGcGCGCGUGCAc- -3'
miRNA:   3'- caUGUAC--GCGaAGGC-UGCGCGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.