miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22877 5' -54.5 NC_005137.2 + 34591 0.68 0.847162
Target:  5'- -gGCggGCGCgucgCCG-CGCGgGUAGCg -3'
miRNA:   3'- caUGuaCGCGaa--GGCuGCGCgCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 40079 0.7 0.726098
Target:  5'- gGUACAuaaUGUGCUcaUCaugaucgaGcACGCGCGCAACg -3'
miRNA:   3'- -CAUGU---ACGCGA--AGg-------C-UGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 42429 0.7 0.756109
Target:  5'- -cACGUnaUGUgUCCGcCGCGCGCAAUc -3'
miRNA:   3'- caUGUAc-GCGaAGGCuGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 42499 0.66 0.917957
Target:  5'- -cACAcgGCGCUUgCuGCGCG-GCGACa -3'
miRNA:   3'- caUGUa-CGCGAAgGcUGCGCgCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 46076 0.69 0.78508
Target:  5'- -aGCGUGCGCcgcuauUUUgGACGCGacguGCAACa -3'
miRNA:   3'- caUGUACGCG------AAGgCUGCGCg---CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 46682 0.69 0.78508
Target:  5'- -aGCAcGCGCcaguaugCuCGcACGCGCGCAACg -3'
miRNA:   3'- caUGUaCGCGaa-----G-GC-UGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 55030 0.66 0.905717
Target:  5'- --cCGUGCGCcgugcaCCaACGCGCGCcGCg -3'
miRNA:   3'- cauGUACGCGaa----GGcUGCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 62607 0.67 0.892485
Target:  5'- cGUACAagucgaUGUGCUcggCCGACGCGUccGUAGa -3'
miRNA:   3'- -CAUGU------ACGCGAa--GGCUGCGCG--CGUUg -5'
22877 5' -54.5 NC_005137.2 + 66836 0.69 0.78508
Target:  5'- uGUACGUGUGU--CCGGCGCcguuaaacGCGCAGg -3'
miRNA:   3'- -CAUGUACGCGaaGGCUGCG--------CGCGUUg -5'
22877 5' -54.5 NC_005137.2 + 67369 0.68 0.855271
Target:  5'- -cGCgAUGCGCgaCCGuCGC-CGCGGCg -3'
miRNA:   3'- caUG-UACGCGaaGGCuGCGcGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 67672 0.69 0.775555
Target:  5'- -aGCGUGCGU-UCCaGCGCGCGUg-- -3'
miRNA:   3'- caUGUACGCGaAGGcUGCGCGCGuug -5'
22877 5' -54.5 NC_005137.2 + 68662 0.66 0.905717
Target:  5'- -aACGUGCGC-----ACGCGCGUGGCg -3'
miRNA:   3'- caUGUACGCGaaggcUGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 68759 0.67 0.892485
Target:  5'- cGUugGUGcCGCUUgUGugGCGCGaaAACc -3'
miRNA:   3'- -CAugUAC-GCGAAgGCugCGCGCg-UUG- -5'
22877 5' -54.5 NC_005137.2 + 69273 0.69 0.78508
Target:  5'- -gGCGUGCGCggUCgCGGCGCguuuagGCGUAAUu -3'
miRNA:   3'- caUGUACGCGa-AG-GCUGCG------CGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 71056 0.73 0.56964
Target:  5'- -gGCAUGCGCaUCaaCGAgGCGCGcCAGCu -3'
miRNA:   3'- caUGUACGCGaAG--GCUgCGCGC-GUUG- -5'
22877 5' -54.5 NC_005137.2 + 71222 0.75 0.478863
Target:  5'- ---aAUGCGCagaUUuaGACGCGCGCAACa -3'
miRNA:   3'- caugUACGCG---AAggCUGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 71982 0.66 0.899224
Target:  5'- cGUACAUGCGCguagCGcACG-GCGaCAACa -3'
miRNA:   3'- -CAUGUACGCGaag-GC-UGCgCGC-GUUG- -5'
22877 5' -54.5 NC_005137.2 + 72378 0.73 0.580043
Target:  5'- uGUACAcGCGCaaUUCGGCG-GCGCAACa -3'
miRNA:   3'- -CAUGUaCGCGa-AGGCUGCgCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 72798 0.66 0.899224
Target:  5'- -----cGCGUUggCGGCGCGCGCuGCc -3'
miRNA:   3'- cauguaCGCGAagGCUGCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 72828 0.68 0.838847
Target:  5'- aGUACAUgaaauucaaGCGCUUCUcaaGAUaGCGaCGCAACg -3'
miRNA:   3'- -CAUGUA---------CGCGAAGG---CUG-CGC-GCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.