miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22877 5' -54.5 NC_005137.2 + 130316 0.66 0.917957
Target:  5'- -cGCAaagGCGCUaCCGAuCGCaGCGCGu- -3'
miRNA:   3'- caUGUa--CGCGAaGGCU-GCG-CGCGUug -5'
22877 5' -54.5 NC_005137.2 + 129969 0.7 0.726098
Target:  5'- -cGCGUGCGUUUCCGAcuccagaagguaCGUugucucgcgGCGCGGCu -3'
miRNA:   3'- caUGUACGCGAAGGCU------------GCG---------CGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 123834 0.68 0.830333
Target:  5'- ---aAUGCGCUgCa-ACGCGCGCGAUa -3'
miRNA:   3'- caugUACGCGAaGgcUGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 120279 0.69 0.775555
Target:  5'- -----aGUGCUggCCGACGCGUGCGc- -3'
miRNA:   3'- cauguaCGCGAa-GGCUGCGCGCGUug -5'
22877 5' -54.5 NC_005137.2 + 118311 0.7 0.736201
Target:  5'- uGUugGcGCGCcgUUCCGACGCGCuGCu-- -3'
miRNA:   3'- -CAugUaCGCG--AAGGCUGCGCG-CGuug -5'
22877 5' -54.5 NC_005137.2 + 112176 0.7 0.755124
Target:  5'- cGUACAgccucugcgGCGUaaaacaaucagcgUUCUGGuCGCGCGCAGCc -3'
miRNA:   3'- -CAUGUa--------CGCG-------------AAGGCU-GCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 110712 0.69 0.794458
Target:  5'- -cGCGUGCGCaa-CGGugUGCGCGCAGa -3'
miRNA:   3'- caUGUACGCGaagGCU--GCGCGCGUUg -5'
22877 5' -54.5 NC_005137.2 + 110406 0.69 0.765895
Target:  5'- -gACGUgGUGUUUCCGcagcuggcaACGgGCGCGACg -3'
miRNA:   3'- caUGUA-CGCGAAGGC---------UGCgCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 110032 0.69 0.78508
Target:  5'- cGUGCAaGCGCggCaaaACGCGCGCcGCa -3'
miRNA:   3'- -CAUGUaCGCGaaGgc-UGCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 109361 0.66 0.917957
Target:  5'- cGUGCAUGCaggaaaUGGCGuUGCGCAACa -3'
miRNA:   3'- -CAUGUACGcgaag-GCUGC-GCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 108591 0.68 0.855271
Target:  5'- --cCGUGUGCUUUuaCGugGUGCGCuuCa -3'
miRNA:   3'- cauGUACGCGAAG--GCugCGCGCGuuG- -5'
22877 5' -54.5 NC_005137.2 + 107968 0.7 0.715909
Target:  5'- --gUAUGCGCgaucggUCgCGuugacGCGCGCGCAGCu -3'
miRNA:   3'- cauGUACGCGa-----AG-GC-----UGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 104346 0.74 0.498485
Target:  5'- cGUGCGUGCGUcgUCGuguuCGCGCuGCGACg -3'
miRNA:   3'- -CAUGUACGCGaaGGCu---GCGCG-CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 104107 0.66 0.927569
Target:  5'- uGUGCGgggGCGCUcuuucaccacgcuuUCCGGuuUGCGCcugauGCAGCg -3'
miRNA:   3'- -CAUGUa--CGCGA--------------AGGCU--GCGCG-----CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 102942 0.68 0.855271
Target:  5'- uGUACAgccgucugGCGCaUCCcaGCGCGCGUcGCg -3'
miRNA:   3'- -CAUGUa-------CGCGaAGGc-UGCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 100067 0.66 0.905717
Target:  5'- -aGCAUGCuuUgugCCG-CgGCGCGCGGCa -3'
miRNA:   3'- caUGUACGcgAa--GGCuG-CGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 100023 0.72 0.621973
Target:  5'- -aGCgGUGCGCaagcacgcggUCCGACGCggcGCGCGGCg -3'
miRNA:   3'- caUG-UACGCGa---------AGGCUGCG---CGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 99363 0.67 0.870841
Target:  5'- -aGCGUGguCGCgUCCGcGCGCGUGCAc- -3'
miRNA:   3'- caUGUAC--GCGaAGGC-UGCGCGCGUug -5'
22877 5' -54.5 NC_005137.2 + 97806 0.66 0.905717
Target:  5'- -cGCgGUGCGCUcUUCGACGCGCa---- -3'
miRNA:   3'- caUG-UACGCGA-AGGCUGCGCGcguug -5'
22877 5' -54.5 NC_005137.2 + 91166 0.74 0.497495
Target:  5'- -gACGUGCGCUaaacucgcuuucuUCCGugGCGCgGCGu- -3'
miRNA:   3'- caUGUACGCGA-------------AGGCugCGCG-CGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.