miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 3' -47.4 NC_005137.2 + 93459 0.66 0.999625
Target:  5'- uGCAuacg--GGCacGG-UGCGCGCCa -3'
miRNA:   3'- -CGUuuuuaaCCGaaCCaACGCGUGGc -5'
22878 3' -47.4 NC_005137.2 + 99228 0.66 0.999625
Target:  5'- aGCuuguauGAUUGuuUUGGgcGCGCGCCc -3'
miRNA:   3'- -CGuuu---UUAACcgAACCaaCGCGUGGc -5'
22878 3' -47.4 NC_005137.2 + 43732 0.66 0.999526
Target:  5'- aGCAAGAAUcgUGGUagcGcGUaagcUGCGCGCCa -3'
miRNA:   3'- -CGUUUUUA--ACCGaa-C-CA----ACGCGUGGc -5'
22878 3' -47.4 NC_005137.2 + 97981 0.66 0.999526
Target:  5'- gGCAAAAcg-GGCgcgcggcgUGGgUGCGC-CCGc -3'
miRNA:   3'- -CGUUUUuaaCCGa-------ACCaACGCGuGGC- -5'
22878 3' -47.4 NC_005137.2 + 96700 0.66 0.999406
Target:  5'- aCAAAAAgcgGGUUcgGcGUUGaCGCACCGc -3'
miRNA:   3'- cGUUUUUaa-CCGAa-C-CAAC-GCGUGGC- -5'
22878 3' -47.4 NC_005137.2 + 67137 0.67 0.998962
Target:  5'- uGCAA--GUUGGCguuugccgaauaaucUuuguccaaaugcUGGUUGUGCACCa -3'
miRNA:   3'- -CGUUuuUAACCG---------------A------------ACCAACGCGUGGc -5'
22878 3' -47.4 NC_005137.2 + 9256 0.67 0.998623
Target:  5'- gGCAAAccuuGAgacGGCUU-GUUGCGCGCgCGc -3'
miRNA:   3'- -CGUUU----UUaa-CCGAAcCAACGCGUG-GC- -5'
22878 3' -47.4 NC_005137.2 + 59776 0.67 0.99757
Target:  5'- uUAGAGAUUugcaacacGGUggGGUUGCGCGCg- -3'
miRNA:   3'- cGUUUUUAA--------CCGaaCCAACGCGUGgc -5'
22878 3' -47.4 NC_005137.2 + 17470 0.67 0.99757
Target:  5'- cGCAGGGuguggGGCUggUGGUgGUGCAgCCGu -3'
miRNA:   3'- -CGUUUUuaa--CCGA--ACCAaCGCGU-GGC- -5'
22878 3' -47.4 NC_005137.2 + 95506 0.68 0.997096
Target:  5'- cGCAucgcuGAcgUGGCcggUGGcgacUUGCGCugCGu -3'
miRNA:   3'- -CGUu----UUuaACCGa--ACC----AACGCGugGC- -5'
22878 3' -47.4 NC_005137.2 + 108099 0.7 0.986779
Target:  5'- aCGAGuugUGGUacGcGUUGCGCGCCGa -3'
miRNA:   3'- cGUUUuuaACCGaaC-CAACGCGUGGC- -5'
22878 3' -47.4 NC_005137.2 + 31004 0.7 0.982985
Target:  5'- cGCuGGAGUUGGUggcggUUGGUgcgUGCGCugCu -3'
miRNA:   3'- -CGuUUUUAACCG-----AACCA---ACGCGugGc -5'
22878 3' -47.4 NC_005137.2 + 103415 0.71 0.966687
Target:  5'- uCAAuAGUUgcGGCUgcGGUUGCGUACCa -3'
miRNA:   3'- cGUUuUUAA--CCGAa-CCAACGCGUGGc -5'
22878 3' -47.4 NC_005137.2 + 95577 0.73 0.927727
Target:  5'- gGCAGcguGUUGGCguuguaguuaaugaUGGgcGCGCGCCGa -3'
miRNA:   3'- -CGUUuu-UAACCGa-------------ACCaaCGCGUGGC- -5'
22878 3' -47.4 NC_005137.2 + 34619 0.75 0.885569
Target:  5'- gGCGGAcaauuuGAUUGGC--GGuUUGCGCGCCGu -3'
miRNA:   3'- -CGUUU------UUAACCGaaCC-AACGCGUGGC- -5'
22878 3' -47.4 NC_005137.2 + 74452 1.13 0.009674
Target:  5'- cGCAAAAAUUGGCUUGGUUGCGCACCGu -3'
miRNA:   3'- -CGUUUUUAACCGAACCAACGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.