Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22878 | 5' | -53.8 | NC_005137.2 | + | 13548 | 0.66 | 0.937233 |
Target: 5'- uUugGGCGCGUaaaacGCGuuCAGCGUAc- -3' miRNA: 3'- -AugCCGCGCAaa---CGCcgGUUGCAUug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 37449 | 0.66 | 0.932102 |
Target: 5'- gACGGCGCGUUgcguuuaaacuugGacacgacgcaguuuuCGGCCGACGcguGCa -3' miRNA: 3'- aUGCCGCGCAAa------------C---------------GCCGGUUGCau-UG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 71301 | 0.66 | 0.931045 |
Target: 5'- aGCGG-GCGUggagauggaaCGGCC-ACGUAGCa -3' miRNA: 3'- aUGCCgCGCAaac-------GCCGGuUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 57197 | 0.66 | 0.926716 |
Target: 5'- cGCGaCGCGUUUuuGGCCAAccugcagcaggcCGUGGCg -3' miRNA: 3'- aUGCcGCGCAAAcgCCGGUU------------GCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 31818 | 0.66 | 0.926716 |
Target: 5'- aGCGGCaCGUggGCGG-CAACGUu-- -3' miRNA: 3'- aUGCCGcGCAaaCGCCgGUUGCAuug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 83139 | 0.66 | 0.925049 |
Target: 5'- gUugGaGCGCGaccaacaagucaagUUUGUGGCCAaggACGUuGCg -3' miRNA: 3'- -AugC-CGCGC--------------AAACGCCGGU---UGCAuUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 83541 | 0.66 | 0.921073 |
Target: 5'- aAgGGgGCucaugGCGGCCAACG-AGCg -3' miRNA: 3'- aUgCCgCGcaaa-CGCCGGUUGCaUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 23086 | 0.67 | 0.90902 |
Target: 5'- cACGGCGCGUUguuccGCGGUaagcugggcuACGUGc- -3' miRNA: 3'- aUGCCGCGCAAa----CGCCGgu--------UGCAUug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 114481 | 0.67 | 0.902614 |
Target: 5'- -uCGGCGUaguccgcguccuGUUgccUGUGGUCAACGUAAUc -3' miRNA: 3'- auGCCGCG------------CAA---ACGCCGGUUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 32644 | 0.67 | 0.889056 |
Target: 5'- gACGGCGCcaaacCGGCgCAcaaGCGUGACg -3' miRNA: 3'- aUGCCGCGcaaacGCCG-GU---UGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 79725 | 0.67 | 0.888353 |
Target: 5'- aUACgGGCGCGUUUGaauGGuaacaaaCCAACGUuGCg -3' miRNA: 3'- -AUG-CCGCGCAAACg--CC-------GGUUGCAuUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 66211 | 0.68 | 0.881912 |
Target: 5'- -uCGGUGCacauGUUggcGCGGCUAGCGUucAACa -3' miRNA: 3'- auGCCGCG----CAAa--CGCCGGUUGCA--UUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 2118 | 0.65 | 0.946282 |
Target: 5'- aGCGcucgaaaGCGCGUUaGUGGCCAAUauaGUGAg -3' miRNA: 3'- aUGC-------CGCGCAAaCGCCGGUUG---CAUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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