Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22878 | 5' | -53.8 | NC_005137.2 | + | 100055 | 0.67 | 0.895958 |
Target: 5'- cGCGGCGCGUUcagcaUGCuuuguGCC-GCGgcGCg -3' miRNA: 3'- aUGCCGCGCAA-----ACGc----CGGuUGCauUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 104640 | 0.7 | 0.789092 |
Target: 5'- cGCGGCGCuggcugcguUUUGCGuGCCGguaGCGUAAUu -3' miRNA: 3'- aUGCCGCGc--------AAACGC-CGGU---UGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 105833 | 0.71 | 0.730015 |
Target: 5'- aACGGCGUGgg-GUGuGUCAACGUcgGACa -3' miRNA: 3'- aUGCCGCGCaaaCGC-CGGUUGCA--UUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 108562 | 0.68 | 0.866914 |
Target: 5'- gACGGaGCGcacgUUGCccaaaucGCCGACGUGACg -3' miRNA: 3'- aUGCCgCGCa---AACGc------CGGUUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 110438 | 0.69 | 0.798467 |
Target: 5'- gACGGUgaGCGUgcacaccGCGGCCGGCGcguACa -3' miRNA: 3'- aUGCCG--CGCAaa-----CGCCGGUUGCau-UG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 112445 | 0.69 | 0.794736 |
Target: 5'- aACGGCGCGgucgcaacacgaUGCGGUaauCGUAACc -3' miRNA: 3'- aUGCCGCGCaa----------ACGCCGguuGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 114481 | 0.67 | 0.902614 |
Target: 5'- -uCGGCGUaguccgcguccuGUUgccUGUGGUCAACGUAAUc -3' miRNA: 3'- auGCCGCG------------CAA---ACGCCGGUUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 117583 | 0.69 | 0.834262 |
Target: 5'- -cCGGUGCGgcUGaCGGgCGACGUGuACg -3' miRNA: 3'- auGCCGCGCaaAC-GCCgGUUGCAU-UG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 122063 | 0.69 | 0.825587 |
Target: 5'- uUGCGGCGUGUccgggucgGCGGCCGG-GUcACu -3' miRNA: 3'- -AUGCCGCGCAaa------CGCCGGUUgCAuUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 122631 | 0.67 | 0.90902 |
Target: 5'- uUACuGCGCGUgaUGCGGUUGAUGUcGCc -3' miRNA: 3'- -AUGcCGCGCAa-ACGCCGGUUGCAuUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 125755 | 0.71 | 0.740147 |
Target: 5'- uUGCGccGCGCGUUUcgaGCGGC--GCGUGGCa -3' miRNA: 3'- -AUGC--CGCGCAAA---CGCCGguUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 128572 | 0.73 | 0.614766 |
Target: 5'- --gGGCGCGggcacGuCGGCCAccGCGUGACa -3' miRNA: 3'- augCCGCGCaaa--C-GCCGGU--UGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 128695 | 0.69 | 0.816723 |
Target: 5'- cACGaGCGCG-UUGCGGUCGAgG-AACc -3' miRNA: 3'- aUGC-CGCGCaAACGCCGGUUgCaUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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