miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 43747 0.66 0.932102
Target:  5'- ---aGCGCGUaagcUGCGcGCCAACG-AACg -3'
miRNA:   3'- augcCGCGCAa---ACGC-CGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 48764 0.66 0.931045
Target:  5'- gGCGGCGCGaucguuggacGCGGCgccgcaCAGCGUGuGCg -3'
miRNA:   3'- aUGCCGCGCaaa-------CGCCG------GUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 49744 0.67 0.888353
Target:  5'- -uCGGCGCGUcguuuguUUGCuuuGCCAGCGUu-- -3'
miRNA:   3'- auGCCGCGCA-------AACGc--CGGUUGCAuug -5'
22878 5' -53.8 NC_005137.2 + 50096 0.67 0.90902
Target:  5'- cACGGcCGCGcaaaUGCGcGUgAGCGUGGCc -3'
miRNA:   3'- aUGCC-GCGCaa--ACGC-CGgUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 57197 0.66 0.926716
Target:  5'- cGCGaCGCGUUUuuGGCCAAccugcagcaggcCGUGGCg -3'
miRNA:   3'- aUGCcGCGCAAAcgCCGGUU------------GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 61067 0.72 0.657113
Target:  5'- aGCGGacaaCGCGUauucguUUGUGGCCGACGguuGCg -3'
miRNA:   3'- aUGCC----GCGCA------AACGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 61375 0.81 0.235029
Target:  5'- gGCGGCcggcgaguugaugGCGUUgGCGGCCGACGUAAg -3'
miRNA:   3'- aUGCCG-------------CGCAAaCGCCGGUUGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 66211 0.68 0.881912
Target:  5'- -uCGGUGCacauGUUggcGCGGCUAGCGUucAACa -3'
miRNA:   3'- auGCCGCG----CAAa--CGCCGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 68389 0.68 0.846074
Target:  5'- cUACGGaCGCGU---CGGCCGagcacaucgacuuguACGUGGCg -3'
miRNA:   3'- -AUGCC-GCGCAaacGCCGGU---------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 69270 0.68 0.851013
Target:  5'- gACGGCGUGc--GCGGUC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCaaaCGCCGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 71301 0.66 0.931045
Target:  5'- aGCGG-GCGUggagauggaaCGGCC-ACGUAGCa -3'
miRNA:   3'- aUGCCgCGCAaac-------GCCGGuUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 74486 1.09 0.00357
Target:  5'- gUACGGCGCGUUUGCGGCCAACGUAACg -3'
miRNA:   3'- -AUGCCGCGCAAACGCCGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 79725 0.67 0.888353
Target:  5'- aUACgGGCGCGUUUGaauGGuaacaaaCCAACGUuGCg -3'
miRNA:   3'- -AUG-CCGCGCAAACg--CC-------GGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 80240 0.66 0.94211
Target:  5'- cGCGGuUGCGUUUGaugaCGGCgCGAacgcCGUGGCg -3'
miRNA:   3'- aUGCC-GCGCAAAC----GCCG-GUU----GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 81317 0.66 0.937233
Target:  5'- aGCGGCGCGUaguuaccgccGCGcGCCAuUGUcGCg -3'
miRNA:   3'- aUGCCGCGCAaa--------CGC-CGGUuGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 83139 0.66 0.925049
Target:  5'- gUugGaGCGCGaccaacaagucaagUUUGUGGCCAaggACGUuGCg -3'
miRNA:   3'- -AugC-CGCGC--------------AAACGCCGGU---UGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 83541 0.66 0.921073
Target:  5'- aAgGGgGCucaugGCGGCCAACG-AGCg -3'
miRNA:   3'- aUgCCgCGcaaa-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 88022 0.66 0.939215
Target:  5'- -cCGGCGCGgccaccgccgagGCGGgCCAccacgugggacgGCGUGGCc -3'
miRNA:   3'- auGCCGCGCaaa---------CGCC-GGU------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 97994 0.78 0.323406
Target:  5'- cGCGGCGUGggUGCgcccgccaaguGGCCAGCGUGcACg -3'
miRNA:   3'- aUGCCGCGCaaACG-----------CCGGUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 100023 0.7 0.750179
Target:  5'- aGCGGUGCGcaagcacGCGGuCCGACGcGGCg -3'
miRNA:   3'- aUGCCGCGCaaa----CGCC-GGUUGCaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.