Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22878 | 5' | -53.8 | NC_005137.2 | + | 79725 | 0.67 | 0.888353 |
Target: 5'- aUACgGGCGCGUUUGaauGGuaacaaaCCAACGUuGCg -3' miRNA: 3'- -AUG-CCGCGCAAACg--CC-------GGUUGCAuUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 74486 | 1.09 | 0.00357 |
Target: 5'- gUACGGCGCGUUUGCGGCCAACGUAACg -3' miRNA: 3'- -AUGCCGCGCAAACGCCGGUUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 71301 | 0.66 | 0.931045 |
Target: 5'- aGCGG-GCGUggagauggaaCGGCC-ACGUAGCa -3' miRNA: 3'- aUGCCgCGCAaac-------GCCGGuUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 69270 | 0.68 | 0.851013 |
Target: 5'- gACGGCGUGc--GCGGUC-GCGgcGCg -3' miRNA: 3'- aUGCCGCGCaaaCGCCGGuUGCauUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 68389 | 0.68 | 0.846074 |
Target: 5'- cUACGGaCGCGU---CGGCCGagcacaucgacuuguACGUGGCg -3' miRNA: 3'- -AUGCC-GCGCAaacGCCGGU---------------UGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 66211 | 0.68 | 0.881912 |
Target: 5'- -uCGGUGCacauGUUggcGCGGCUAGCGUucAACa -3' miRNA: 3'- auGCCGCG----CAAa--CGCCGGUUGCA--UUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 61375 | 0.81 | 0.235029 |
Target: 5'- gGCGGCcggcgaguugaugGCGUUgGCGGCCGACGUAAg -3' miRNA: 3'- aUGCCG-------------CGCAAaCGCCGGUUGCAUUg -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 61067 | 0.72 | 0.657113 |
Target: 5'- aGCGGacaaCGCGUauucguUUGUGGCCGACGguuGCg -3' miRNA: 3'- aUGCC----GCGCA------AACGCCGGUUGCau-UG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 57197 | 0.66 | 0.926716 |
Target: 5'- cGCGaCGCGUUUuuGGCCAAccugcagcaggcCGUGGCg -3' miRNA: 3'- aUGCcGCGCAAAcgCCGGUU------------GCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 50096 | 0.67 | 0.90902 |
Target: 5'- cACGGcCGCGcaaaUGCGcGUgAGCGUGGCc -3' miRNA: 3'- aUGCC-GCGCaa--ACGC-CGgUUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 49744 | 0.67 | 0.888353 |
Target: 5'- -uCGGCGCGUcguuuguUUGCuuuGCCAGCGUu-- -3' miRNA: 3'- auGCCGCGCA-------AACGc--CGGUUGCAuug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 48764 | 0.66 | 0.931045 |
Target: 5'- gGCGGCGCGaucguuggacGCGGCgccgcaCAGCGUGuGCg -3' miRNA: 3'- aUGCCGCGCaaa-------CGCCG------GUUGCAU-UG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 43747 | 0.66 | 0.932102 |
Target: 5'- ---aGCGCGUaagcUGCGcGCCAACG-AACg -3' miRNA: 3'- augcCGCGCAa---ACGC-CGGUUGCaUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 37449 | 0.66 | 0.932102 |
Target: 5'- gACGGCGCGUUgcguuuaaacuugGacacgacgcaguuuuCGGCCGACGcguGCa -3' miRNA: 3'- aUGCCGCGCAAa------------C---------------GCCGGUUGCau-UG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 35672 | 0.74 | 0.541487 |
Target: 5'- aACGuGCGCGUUcGCGGuCCAACGcaaAACa -3' miRNA: 3'- aUGC-CGCGCAAaCGCC-GGUUGCa--UUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 34602 | 0.68 | 0.866914 |
Target: 5'- cGCcGCGCGggUaGCGGUCGGCGcGGCu -3' miRNA: 3'- aUGcCGCGCaaA-CGCCGGUUGCaUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 33779 | 0.73 | 0.572638 |
Target: 5'- cGCGGCgGCGUUgUGCuGuGCCAACGUuGCa -3' miRNA: 3'- aUGCCG-CGCAA-ACG-C-CGGUUGCAuUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 32644 | 0.67 | 0.889056 |
Target: 5'- gACGGCGCcaaacCGGCgCAcaaGCGUGACg -3' miRNA: 3'- aUGCCGCGcaaacGCCG-GU---UGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 31818 | 0.66 | 0.926716 |
Target: 5'- aGCGGCaCGUggGCGG-CAACGUu-- -3' miRNA: 3'- aUGCCGcGCAaaCGCCgGUUGCAuug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 31187 | 0.66 | 0.932102 |
Target: 5'- aUACGGCGCaac--CGGCCcGCGUcGCc -3' miRNA: 3'- -AUGCCGCGcaaacGCCGGuUGCAuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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