miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 128695 0.69 0.816723
Target:  5'- cACGaGCGCG-UUGCGGUCGAgG-AACc -3'
miRNA:   3'- aUGC-CGCGCaAACGCCGGUUgCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 128572 0.73 0.614766
Target:  5'- --gGGCGCGggcacGuCGGCCAccGCGUGACa -3'
miRNA:   3'- augCCGCGCaaa--C-GCCGGU--UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 125755 0.71 0.740147
Target:  5'- uUGCGccGCGCGUUUcgaGCGGC--GCGUGGCa -3'
miRNA:   3'- -AUGC--CGCGCAAA---CGCCGguUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 122631 0.67 0.90902
Target:  5'- uUACuGCGCGUgaUGCGGUUGAUGUcGCc -3'
miRNA:   3'- -AUGcCGCGCAa-ACGCCGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 122063 0.69 0.825587
Target:  5'- uUGCGGCGUGUccgggucgGCGGCCGG-GUcACu -3'
miRNA:   3'- -AUGCCGCGCAaa------CGCCGGUUgCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 117583 0.69 0.834262
Target:  5'- -cCGGUGCGgcUGaCGGgCGACGUGuACg -3'
miRNA:   3'- auGCCGCGCaaAC-GCCgGUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 114481 0.67 0.902614
Target:  5'- -uCGGCGUaguccgcguccuGUUgccUGUGGUCAACGUAAUc -3'
miRNA:   3'- auGCCGCG------------CAA---ACGCCGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 112445 0.69 0.794736
Target:  5'- aACGGCGCGgucgcaacacgaUGCGGUaauCGUAACc -3'
miRNA:   3'- aUGCCGCGCaa----------ACGCCGguuGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 110438 0.69 0.798467
Target:  5'- gACGGUgaGCGUgcacaccGCGGCCGGCGcguACa -3'
miRNA:   3'- aUGCCG--CGCAaa-----CGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 108562 0.68 0.866914
Target:  5'- gACGGaGCGcacgUUGCccaaaucGCCGACGUGACg -3'
miRNA:   3'- aUGCCgCGCa---AACGc------CGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 105833 0.71 0.730015
Target:  5'- aACGGCGUGgg-GUGuGUCAACGUcgGACa -3'
miRNA:   3'- aUGCCGCGCaaaCGC-CGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 104640 0.7 0.789092
Target:  5'- cGCGGCGCuggcugcguUUUGCGuGCCGguaGCGUAAUu -3'
miRNA:   3'- aUGCCGCGc--------AAACGC-CGGU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 100055 0.67 0.895958
Target:  5'- cGCGGCGCGUUcagcaUGCuuuguGCC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCAA-----ACGc----CGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 100023 0.7 0.750179
Target:  5'- aGCGGUGCGcaagcacGCGGuCCGACGcGGCg -3'
miRNA:   3'- aUGCCGCGCaaa----CGCC-GGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 97994 0.78 0.323406
Target:  5'- cGCGGCGUGggUGCgcccgccaaguGGCCAGCGUGcACg -3'
miRNA:   3'- aUGCCGCGCaaACG-----------CCGGUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 88022 0.66 0.939215
Target:  5'- -cCGGCGCGgccaccgccgagGCGGgCCAccacgugggacgGCGUGGCc -3'
miRNA:   3'- auGCCGCGCaaa---------CGCC-GGU------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 83541 0.66 0.921073
Target:  5'- aAgGGgGCucaugGCGGCCAACG-AGCg -3'
miRNA:   3'- aUgCCgCGcaaa-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 83139 0.66 0.925049
Target:  5'- gUugGaGCGCGaccaacaagucaagUUUGUGGCCAaggACGUuGCg -3'
miRNA:   3'- -AugC-CGCGC--------------AAACGCCGGU---UGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 81317 0.66 0.937233
Target:  5'- aGCGGCGCGUaguuaccgccGCGcGCCAuUGUcGCg -3'
miRNA:   3'- aUGCCGCGCAaa--------CGC-CGGUuGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 80240 0.66 0.94211
Target:  5'- cGCGGuUGCGUUUGaugaCGGCgCGAacgcCGUGGCg -3'
miRNA:   3'- aUGCC-GCGCAAAC----GCCG-GUU----GCAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.