miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 125 0.72 0.657113
Target:  5'- cUGCGGCGCGUccGCGGCguACa---- -3'
miRNA:   3'- -AUGCCGCGCAaaCGCCGguUGcauug -5'
22878 5' -53.8 NC_005137.2 + 765 0.68 0.84274
Target:  5'- gGCGGCaCGUUUgGCGGCggaGGCgGUGGCa -3'
miRNA:   3'- aUGCCGcGCAAA-CGCCGg--UUG-CAUUG- -5'
22878 5' -53.8 NC_005137.2 + 2118 0.65 0.946282
Target:  5'- aGCGcucgaaaGCGCGUUaGUGGCCAAUauaGUGAg -3'
miRNA:   3'- aUGC-------CGCGCAAaCGCCGGUUG---CAUUg -5'
22878 5' -53.8 NC_005137.2 + 6992 0.66 0.94211
Target:  5'- cACGGacgaGCGgucGCcgGGCaCAACGUGGCg -3'
miRNA:   3'- aUGCCg---CGCaaaCG--CCG-GUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 8621 0.68 0.859074
Target:  5'- cAgGGCGCuaagGCGGCgGGCGUGGg -3'
miRNA:   3'- aUgCCGCGcaaaCGCCGgUUGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 12830 0.71 0.699114
Target:  5'- aACGGCGUcaaaGUUUuCGGCCAGgcCGUAGCc -3'
miRNA:   3'- aUGCCGCG----CAAAcGCCGGUU--GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 12952 0.69 0.798467
Target:  5'- --aGGUGCgGUUUGUGGCCAagaaaugcgcACGUGGg -3'
miRNA:   3'- augCCGCG-CAAACGCCGGU----------UGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 13548 0.66 0.937233
Target:  5'- uUugGGCGCGUaaaacGCGuuCAGCGUAc- -3'
miRNA:   3'- -AugCCGCGCAaa---CGCcgGUUGCAUug -5'
22878 5' -53.8 NC_005137.2 + 14718 0.7 0.750179
Target:  5'- -uUGGCGUGcgUGCuGGCCGucuuccacaACGUGACg -3'
miRNA:   3'- auGCCGCGCaaACG-CCGGU---------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 20381 0.7 0.769899
Target:  5'- -uCGGCGCGUUUGUgcacGGCCGucaccACG-GACa -3'
miRNA:   3'- auGCCGCGCAAACG----CCGGU-----UGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 23086 0.67 0.90902
Target:  5'- cACGGCGCGUUguuccGCGGUaagcugggcuACGUGc- -3'
miRNA:   3'- aUGCCGCGCAAa----CGCCGgu--------UGCAUug -5'
22878 5' -53.8 NC_005137.2 + 24299 0.84 0.147865
Target:  5'- aACGGCgGCGUUUGCGGCUgcgGugGUGGCg -3'
miRNA:   3'- aUGCCG-CGCAAACGCCGG---UugCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 27316 0.67 0.90902
Target:  5'- gGCGGCgGCGUUUugggcaGUGGCgAAgGUGAUc -3'
miRNA:   3'- aUGCCG-CGCAAA------CGCCGgUUgCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 31187 0.66 0.932102
Target:  5'- aUACGGCGCaac--CGGCCcGCGUcGCc -3'
miRNA:   3'- -AUGCCGCGcaaacGCCGGuUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 31818 0.66 0.926716
Target:  5'- aGCGGCaCGUggGCGG-CAACGUu-- -3'
miRNA:   3'- aUGCCGcGCAaaCGCCgGUUGCAuug -5'
22878 5' -53.8 NC_005137.2 + 32644 0.67 0.889056
Target:  5'- gACGGCGCcaaacCGGCgCAcaaGCGUGACg -3'
miRNA:   3'- aUGCCGCGcaaacGCCG-GU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 33779 0.73 0.572638
Target:  5'- cGCGGCgGCGUUgUGCuGuGCCAACGUuGCa -3'
miRNA:   3'- aUGCCG-CGCAA-ACG-C-CGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 34602 0.68 0.866914
Target:  5'- cGCcGCGCGggUaGCGGUCGGCGcGGCu -3'
miRNA:   3'- aUGcCGCGCaaA-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 35672 0.74 0.541487
Target:  5'- aACGuGCGCGUUcGCGGuCCAACGcaaAACa -3'
miRNA:   3'- aUGC-CGCGCAAaCGCC-GGUUGCa--UUG- -5'
22878 5' -53.8 NC_005137.2 + 37449 0.66 0.932102
Target:  5'- gACGGCGCGUUgcguuuaaacuugGacacgacgcaguuuuCGGCCGACGcguGCa -3'
miRNA:   3'- aUGCCGCGCAAa------------C---------------GCCGGUUGCau-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.