miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 6992 0.66 0.94211
Target:  5'- cACGGacgaGCGgucGCcgGGCaCAACGUGGCg -3'
miRNA:   3'- aUGCCg---CGCaaaCG--CCG-GUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 100055 0.67 0.895958
Target:  5'- cGCGGCGCGUUcagcaUGCuuuguGCC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCAA-----ACGc----CGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 27316 0.67 0.90902
Target:  5'- gGCGGCgGCGUUUugggcaGUGGCgAAgGUGAUc -3'
miRNA:   3'- aUGCCG-CGCAAA------CGCCGgUUgCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 50096 0.67 0.90902
Target:  5'- cACGGcCGCGcaaaUGCGcGUgAGCGUGGCc -3'
miRNA:   3'- aUGCC-GCGCaa--ACGC-CGgUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 122631 0.67 0.90902
Target:  5'- uUACuGCGCGUgaUGCGGUUGAUGUcGCc -3'
miRNA:   3'- -AUGcCGCGCAa-ACGCCGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 48764 0.66 0.931045
Target:  5'- gGCGGCGCGaucguuggacGCGGCgccgcaCAGCGUGuGCg -3'
miRNA:   3'- aUGCCGCGCaaa-------CGCCG------GUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 31187 0.66 0.932102
Target:  5'- aUACGGCGCaac--CGGCCcGCGUcGCc -3'
miRNA:   3'- -AUGCCGCGcaaacGCCGGuUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 43747 0.66 0.932102
Target:  5'- ---aGCGCGUaagcUGCGcGCCAACG-AACg -3'
miRNA:   3'- augcCGCGCAa---ACGC-CGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 88022 0.66 0.939215
Target:  5'- -cCGGCGCGgccaccgccgagGCGGgCCAccacgugggacgGCGUGGCc -3'
miRNA:   3'- auGCCGCGCaaa---------CGCC-GGU------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 49744 0.67 0.888353
Target:  5'- -uCGGCGCGUcguuuguUUGCuuuGCCAGCGUu-- -3'
miRNA:   3'- auGCCGCGCA-------AACGc--CGGUUGCAuug -5'
22878 5' -53.8 NC_005137.2 + 69270 0.68 0.851013
Target:  5'- gACGGCGUGc--GCGGUC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCaaaCGCCGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 68389 0.68 0.846074
Target:  5'- cUACGGaCGCGU---CGGCCGagcacaucgacuuguACGUGGCg -3'
miRNA:   3'- -AUGCC-GCGCAaacGCCGGU---------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 97994 0.78 0.323406
Target:  5'- cGCGGCGUGggUGCgcccgccaaguGGCCAGCGUGcACg -3'
miRNA:   3'- aUGCCGCGCaaACG-----------CCGGUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 33779 0.73 0.572638
Target:  5'- cGCGGCgGCGUUgUGCuGuGCCAACGUuGCa -3'
miRNA:   3'- aUGCCG-CGCAA-ACG-C-CGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 12830 0.71 0.699114
Target:  5'- aACGGCGUcaaaGUUUuCGGCCAGgcCGUAGCc -3'
miRNA:   3'- aUGCCGCG----CAAAcGCCGGUU--GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 100023 0.7 0.750179
Target:  5'- aGCGGUGCGcaagcacGCGGuCCGACGcGGCg -3'
miRNA:   3'- aUGCCGCGCaaa----CGCC-GGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 12952 0.69 0.798467
Target:  5'- --aGGUGCgGUUUGUGGCCAagaaaugcgcACGUGGg -3'
miRNA:   3'- augCCGCG-CAAACGCCGGU----------UGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 110438 0.69 0.798467
Target:  5'- gACGGUgaGCGUgcacaccGCGGCCGGCGcguACa -3'
miRNA:   3'- aUGCCG--CGCAaa-----CGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 122063 0.69 0.825587
Target:  5'- uUGCGGCGUGUccgggucgGCGGCCGG-GUcACu -3'
miRNA:   3'- -AUGCCGCGCAaa------CGCCGGUUgCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 117583 0.69 0.834262
Target:  5'- -cCGGUGCGgcUGaCGGgCGACGUGuACg -3'
miRNA:   3'- auGCCGCGCaaAC-GCCgGUUGCAU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.