miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 74486 1.09 0.00357
Target:  5'- gUACGGCGCGUUUGCGGCCAACGUAACg -3'
miRNA:   3'- -AUGCCGCGCAAACGCCGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 24299 0.84 0.147865
Target:  5'- aACGGCgGCGUUUGCGGCUgcgGugGUGGCg -3'
miRNA:   3'- aUGCCG-CGCAAACGCCGG---UugCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 61375 0.81 0.235029
Target:  5'- gGCGGCcggcgaguugaugGCGUUgGCGGCCGACGUAAg -3'
miRNA:   3'- aUGCCG-------------CGCAAaCGCCGGUUGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 97994 0.78 0.323406
Target:  5'- cGCGGCGUGggUGCgcccgccaaguGGCCAGCGUGcACg -3'
miRNA:   3'- aUGCCGCGCaaACG-----------CCGGUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 35672 0.74 0.541487
Target:  5'- aACGuGCGCGUUcGCGGuCCAACGcaaAACa -3'
miRNA:   3'- aUGC-CGCGCAAaCGCC-GGUUGCa--UUG- -5'
22878 5' -53.8 NC_005137.2 + 33779 0.73 0.572638
Target:  5'- cGCGGCgGCGUUgUGCuGuGCCAACGUuGCa -3'
miRNA:   3'- aUGCCG-CGCAA-ACG-C-CGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 128572 0.73 0.614766
Target:  5'- --gGGCGCGggcacGuCGGCCAccGCGUGACa -3'
miRNA:   3'- augCCGCGCaaa--C-GCCGGU--UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 125 0.72 0.657113
Target:  5'- cUGCGGCGCGUccGCGGCguACa---- -3'
miRNA:   3'- -AUGCCGCGCAaaCGCCGguUGcauug -5'
22878 5' -53.8 NC_005137.2 + 61067 0.72 0.657113
Target:  5'- aGCGGacaaCGCGUauucguUUGUGGCCGACGguuGCg -3'
miRNA:   3'- aUGCC----GCGCA------AACGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 12830 0.71 0.699114
Target:  5'- aACGGCGUcaaaGUUUuCGGCCAGgcCGUAGCc -3'
miRNA:   3'- aUGCCGCG----CAAAcGCCGGUU--GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 105833 0.71 0.730015
Target:  5'- aACGGCGUGgg-GUGuGUCAACGUcgGACa -3'
miRNA:   3'- aUGCCGCGCaaaCGC-CGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 125755 0.71 0.740147
Target:  5'- uUGCGccGCGCGUUUcgaGCGGC--GCGUGGCa -3'
miRNA:   3'- -AUGC--CGCGCAAA---CGCCGguUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 100023 0.7 0.750179
Target:  5'- aGCGGUGCGcaagcacGCGGuCCGACGcGGCg -3'
miRNA:   3'- aUGCCGCGCaaa----CGCC-GGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 14718 0.7 0.750179
Target:  5'- -uUGGCGUGcgUGCuGGCCGucuuccacaACGUGACg -3'
miRNA:   3'- auGCCGCGCaaACG-CCGGU---------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 20381 0.7 0.769899
Target:  5'- -uCGGCGCGUUUGUgcacGGCCGucaccACG-GACa -3'
miRNA:   3'- auGCCGCGCAAACG----CCGGU-----UGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 104640 0.7 0.789092
Target:  5'- cGCGGCGCuggcugcguUUUGCGuGCCGguaGCGUAAUu -3'
miRNA:   3'- aUGCCGCGc--------AAACGC-CGGU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 112445 0.69 0.794736
Target:  5'- aACGGCGCGgucgcaacacgaUGCGGUaauCGUAACc -3'
miRNA:   3'- aUGCCGCGCaa----------ACGCCGguuGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 110438 0.69 0.798467
Target:  5'- gACGGUgaGCGUgcacaccGCGGCCGGCGcguACa -3'
miRNA:   3'- aUGCCG--CGCAaa-----CGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 12952 0.69 0.798467
Target:  5'- --aGGUGCgGUUUGUGGCCAagaaaugcgcACGUGGg -3'
miRNA:   3'- augCCGCG-CAAACGCCGGU----------UGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 128695 0.69 0.816723
Target:  5'- cACGaGCGCG-UUGCGGUCGAgG-AACc -3'
miRNA:   3'- aUGC-CGCGCaAACGCCGGUUgCaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.