miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 2118 0.65 0.946282
Target:  5'- aGCGcucgaaaGCGCGUUaGUGGCCAAUauaGUGAg -3'
miRNA:   3'- aUGC-------CGCGCAAaCGCCGGUUG---CAUUg -5'
22878 5' -53.8 NC_005137.2 + 80240 0.66 0.94211
Target:  5'- cGCGGuUGCGUUUGaugaCGGCgCGAacgcCGUGGCg -3'
miRNA:   3'- aUGCC-GCGCAAAC----GCCG-GUU----GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 6992 0.66 0.94211
Target:  5'- cACGGacgaGCGgucGCcgGGCaCAACGUGGCg -3'
miRNA:   3'- aUGCCg---CGCaaaCG--CCG-GUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 88022 0.66 0.939215
Target:  5'- -cCGGCGCGgccaccgccgagGCGGgCCAccacgugggacgGCGUGGCc -3'
miRNA:   3'- auGCCGCGCaaa---------CGCC-GGU------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 13548 0.66 0.937233
Target:  5'- uUugGGCGCGUaaaacGCGuuCAGCGUAc- -3'
miRNA:   3'- -AugCCGCGCAaa---CGCcgGUUGCAUug -5'
22878 5' -53.8 NC_005137.2 + 81317 0.66 0.937233
Target:  5'- aGCGGCGCGUaguuaccgccGCGcGCCAuUGUcGCg -3'
miRNA:   3'- aUGCCGCGCAaa--------CGC-CGGUuGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 37449 0.66 0.932102
Target:  5'- gACGGCGCGUUgcguuuaaacuugGacacgacgcaguuuuCGGCCGACGcguGCa -3'
miRNA:   3'- aUGCCGCGCAAa------------C---------------GCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 31187 0.66 0.932102
Target:  5'- aUACGGCGCaac--CGGCCcGCGUcGCc -3'
miRNA:   3'- -AUGCCGCGcaaacGCCGGuUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 43747 0.66 0.932102
Target:  5'- ---aGCGCGUaagcUGCGcGCCAACG-AACg -3'
miRNA:   3'- augcCGCGCAa---ACGC-CGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 48764 0.66 0.931045
Target:  5'- gGCGGCGCGaucguuggacGCGGCgccgcaCAGCGUGuGCg -3'
miRNA:   3'- aUGCCGCGCaaa-------CGCCG------GUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 71301 0.66 0.931045
Target:  5'- aGCGG-GCGUggagauggaaCGGCC-ACGUAGCa -3'
miRNA:   3'- aUGCCgCGCAaac-------GCCGGuUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 31818 0.66 0.926716
Target:  5'- aGCGGCaCGUggGCGG-CAACGUu-- -3'
miRNA:   3'- aUGCCGcGCAaaCGCCgGUUGCAuug -5'
22878 5' -53.8 NC_005137.2 + 57197 0.66 0.926716
Target:  5'- cGCGaCGCGUUUuuGGCCAAccugcagcaggcCGUGGCg -3'
miRNA:   3'- aUGCcGCGCAAAcgCCGGUU------------GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 83139 0.66 0.925049
Target:  5'- gUugGaGCGCGaccaacaagucaagUUUGUGGCCAaggACGUuGCg -3'
miRNA:   3'- -AugC-CGCGC--------------AAACGCCGGU---UGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 83541 0.66 0.921073
Target:  5'- aAgGGgGCucaugGCGGCCAACG-AGCg -3'
miRNA:   3'- aUgCCgCGcaaa-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 122631 0.67 0.90902
Target:  5'- uUACuGCGCGUgaUGCGGUUGAUGUcGCc -3'
miRNA:   3'- -AUGcCGCGCAa-ACGCCGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 50096 0.67 0.90902
Target:  5'- cACGGcCGCGcaaaUGCGcGUgAGCGUGGCc -3'
miRNA:   3'- aUGCC-GCGCaa--ACGC-CGgUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 27316 0.67 0.90902
Target:  5'- gGCGGCgGCGUUUugggcaGUGGCgAAgGUGAUc -3'
miRNA:   3'- aUGCCG-CGCAAA------CGCCGgUUgCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 23086 0.67 0.90902
Target:  5'- cACGGCGCGUUguuccGCGGUaagcugggcuACGUGc- -3'
miRNA:   3'- aUGCCGCGCAAa----CGCCGgu--------UGCAUug -5'
22878 5' -53.8 NC_005137.2 + 114481 0.67 0.902614
Target:  5'- -uCGGCGUaguccgcguccuGUUgccUGUGGUCAACGUAAUc -3'
miRNA:   3'- auGCCGCG------------CAA---ACGCCGGUUGCAUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.