miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 100055 0.67 0.895958
Target:  5'- cGCGGCGCGUUcagcaUGCuuuguGCC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCAA-----ACGc----CGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 32644 0.67 0.889056
Target:  5'- gACGGCGCcaaacCGGCgCAcaaGCGUGACg -3'
miRNA:   3'- aUGCCGCGcaaacGCCG-GU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 49744 0.67 0.888353
Target:  5'- -uCGGCGCGUcguuuguUUGCuuuGCCAGCGUu-- -3'
miRNA:   3'- auGCCGCGCA-------AACGc--CGGUUGCAuug -5'
22878 5' -53.8 NC_005137.2 + 79725 0.67 0.888353
Target:  5'- aUACgGGCGCGUUUGaauGGuaacaaaCCAACGUuGCg -3'
miRNA:   3'- -AUG-CCGCGCAAACg--CC-------GGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 66211 0.68 0.881912
Target:  5'- -uCGGUGCacauGUUggcGCGGCUAGCGUucAACa -3'
miRNA:   3'- auGCCGCG----CAAa--CGCCGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 108562 0.68 0.866914
Target:  5'- gACGGaGCGcacgUUGCccaaaucGCCGACGUGACg -3'
miRNA:   3'- aUGCCgCGCa---AACGc------CGGUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 34602 0.68 0.866914
Target:  5'- cGCcGCGCGggUaGCGGUCGGCGcGGCu -3'
miRNA:   3'- aUGcCGCGCaaA-CGCCGGUUGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 8621 0.68 0.859074
Target:  5'- cAgGGCGCuaagGCGGCgGGCGUGGg -3'
miRNA:   3'- aUgCCGCGcaaaCGCCGgUUGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 69270 0.68 0.851013
Target:  5'- gACGGCGUGc--GCGGUC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCaaaCGCCGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 68389 0.68 0.846074
Target:  5'- cUACGGaCGCGU---CGGCCGagcacaucgacuuguACGUGGCg -3'
miRNA:   3'- -AUGCC-GCGCAaacGCCGGU---------------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 765 0.68 0.84274
Target:  5'- gGCGGCaCGUUUgGCGGCggaGGCgGUGGCa -3'
miRNA:   3'- aUGCCGcGCAAA-CGCCGg--UUG-CAUUG- -5'
22878 5' -53.8 NC_005137.2 + 117583 0.69 0.834262
Target:  5'- -cCGGUGCGgcUGaCGGgCGACGUGuACg -3'
miRNA:   3'- auGCCGCGCaaAC-GCCgGUUGCAU-UG- -5'
22878 5' -53.8 NC_005137.2 + 122063 0.69 0.825587
Target:  5'- uUGCGGCGUGUccgggucgGCGGCCGG-GUcACu -3'
miRNA:   3'- -AUGCCGCGCAaa------CGCCGGUUgCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 128695 0.69 0.816723
Target:  5'- cACGaGCGCG-UUGCGGUCGAgG-AACc -3'
miRNA:   3'- aUGC-CGCGCaAACGCCGGUUgCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 12952 0.69 0.798467
Target:  5'- --aGGUGCgGUUUGUGGCCAagaaaugcgcACGUGGg -3'
miRNA:   3'- augCCGCG-CAAACGCCGGU----------UGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 110438 0.69 0.798467
Target:  5'- gACGGUgaGCGUgcacaccGCGGCCGGCGcguACa -3'
miRNA:   3'- aUGCCG--CGCAaa-----CGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 112445 0.69 0.794736
Target:  5'- aACGGCGCGgucgcaacacgaUGCGGUaauCGUAACc -3'
miRNA:   3'- aUGCCGCGCaa----------ACGCCGguuGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 104640 0.7 0.789092
Target:  5'- cGCGGCGCuggcugcguUUUGCGuGCCGguaGCGUAAUu -3'
miRNA:   3'- aUGCCGCGc--------AAACGC-CGGU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 20381 0.7 0.769899
Target:  5'- -uCGGCGCGUUUGUgcacGGCCGucaccACG-GACa -3'
miRNA:   3'- auGCCGCGCAAACG----CCGGU-----UGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 100023 0.7 0.750179
Target:  5'- aGCGGUGCGcaagcacGCGGuCCGACGcGGCg -3'
miRNA:   3'- aUGCCGCGCaaa----CGCC-GGUUGCaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.