miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22878 5' -53.8 NC_005137.2 + 104640 0.7 0.789092
Target:  5'- cGCGGCGCuggcugcguUUUGCGuGCCGguaGCGUAAUu -3'
miRNA:   3'- aUGCCGCGc--------AAACGC-CGGU---UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 20381 0.7 0.769899
Target:  5'- -uCGGCGCGUUUGUgcacGGCCGucaccACG-GACa -3'
miRNA:   3'- auGCCGCGCAAACG----CCGGU-----UGCaUUG- -5'
22878 5' -53.8 NC_005137.2 + 35672 0.74 0.541487
Target:  5'- aACGuGCGCGUUcGCGGuCCAACGcaaAACa -3'
miRNA:   3'- aUGC-CGCGCAAaCGCC-GGUUGCa--UUG- -5'
22878 5' -53.8 NC_005137.2 + 66211 0.68 0.881912
Target:  5'- -uCGGUGCacauGUUggcGCGGCUAGCGUucAACa -3'
miRNA:   3'- auGCCGCG----CAAa--CGCCGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 14718 0.7 0.750179
Target:  5'- -uUGGCGUGcgUGCuGGCCGucuuccacaACGUGACg -3'
miRNA:   3'- auGCCGCGCaaACG-CCGGU---------UGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 61067 0.72 0.657113
Target:  5'- aGCGGacaaCGCGUauucguUUGUGGCCGACGguuGCg -3'
miRNA:   3'- aUGCC----GCGCA------AACGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 24299 0.84 0.147865
Target:  5'- aACGGCgGCGUUUGCGGCUgcgGugGUGGCg -3'
miRNA:   3'- aUGCCG-CGCAAACGCCGG---UugCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 112445 0.69 0.794736
Target:  5'- aACGGCGCGgucgcaacacgaUGCGGUaauCGUAACc -3'
miRNA:   3'- aUGCCGCGCaa----------ACGCCGguuGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 125 0.72 0.657113
Target:  5'- cUGCGGCGCGUccGCGGCguACa---- -3'
miRNA:   3'- -AUGCCGCGCAaaCGCCGguUGcauug -5'
22878 5' -53.8 NC_005137.2 + 105833 0.71 0.730015
Target:  5'- aACGGCGUGgg-GUGuGUCAACGUcgGACa -3'
miRNA:   3'- aUGCCGCGCaaaCGC-CGGUUGCA--UUG- -5'
22878 5' -53.8 NC_005137.2 + 125755 0.71 0.740147
Target:  5'- uUGCGccGCGCGUUUcgaGCGGC--GCGUGGCa -3'
miRNA:   3'- -AUGC--CGCGCAAA---CGCCGguUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 6992 0.66 0.94211
Target:  5'- cACGGacgaGCGgucGCcgGGCaCAACGUGGCg -3'
miRNA:   3'- aUGCCg---CGCaaaCG--CCG-GUUGCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 49744 0.67 0.888353
Target:  5'- -uCGGCGCGUcguuuguUUGCuuuGCCAGCGUu-- -3'
miRNA:   3'- auGCCGCGCA-------AACGc--CGGUUGCAuug -5'
22878 5' -53.8 NC_005137.2 + 33779 0.73 0.572638
Target:  5'- cGCGGCgGCGUUgUGCuGuGCCAACGUuGCa -3'
miRNA:   3'- aUGCCG-CGCAA-ACG-C-CGGUUGCAuUG- -5'
22878 5' -53.8 NC_005137.2 + 80240 0.66 0.94211
Target:  5'- cGCGGuUGCGUUUGaugaCGGCgCGAacgcCGUGGCg -3'
miRNA:   3'- aUGCC-GCGCAAAC----GCCG-GUU----GCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 69270 0.68 0.851013
Target:  5'- gACGGCGUGc--GCGGUC-GCGgcGCg -3'
miRNA:   3'- aUGCCGCGCaaaCGCCGGuUGCauUG- -5'
22878 5' -53.8 NC_005137.2 + 12952 0.69 0.798467
Target:  5'- --aGGUGCgGUUUGUGGCCAagaaaugcgcACGUGGg -3'
miRNA:   3'- augCCGCG-CAAACGCCGGU----------UGCAUUg -5'
22878 5' -53.8 NC_005137.2 + 27316 0.67 0.90902
Target:  5'- gGCGGCgGCGUUUugggcaGUGGCgAAgGUGAUc -3'
miRNA:   3'- aUGCCG-CGCAAA------CGCCGgUUgCAUUG- -5'
22878 5' -53.8 NC_005137.2 + 110438 0.69 0.798467
Target:  5'- gACGGUgaGCGUgcacaccGCGGCCGGCGcguACa -3'
miRNA:   3'- aUGCCG--CGCAaa-----CGCCGGUUGCau-UG- -5'
22878 5' -53.8 NC_005137.2 + 50096 0.67 0.90902
Target:  5'- cACGGcCGCGcaaaUGCGcGUgAGCGUGGCc -3'
miRNA:   3'- aUGCC-GCGCaa--ACGC-CGgUUGCAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.