miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 49690 0.68 0.818521
Target:  5'- cGCGCGGCGguaacuacgcgccgcUUgGCCGGUguagguguuUCGUcCGCu -3'
miRNA:   3'- aCGCGCCGC---------------AGgUGGCUA---------AGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 51331 0.68 0.779166
Target:  5'- aGCGgGGuCGUCCGCCGccgCGccUGCa -3'
miRNA:   3'- aCGCgCC-GCAGGUGGCuaaGCauGCG- -5'
22879 5' -56.1 NC_005137.2 + 51398 0.66 0.878467
Target:  5'- aGCGCGGCcgcUCCACUaauuGAUaugCG-ACGCu -3'
miRNA:   3'- aCGCGCCGc--AGGUGG----CUAa--GCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 53067 0.74 0.462673
Target:  5'- gUGCGCGGUGUCCACaagucgCGAUgaaGUGCa- -3'
miRNA:   3'- -ACGCGCCGCAGGUG------GCUAag-CAUGcg -5'
22879 5' -56.1 NC_005137.2 + 54418 0.67 0.871247
Target:  5'- --gGCGGCGUCCAacaCGAgcaugugaUCGgGCGUg -3'
miRNA:   3'- acgCGCCGCAGGUg--GCUa-------AGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 58487 0.73 0.528726
Target:  5'- uUGCGCGGCGUuagcuuccagCCACagcuugaaCGGUUCGUccacaaacaaaccGCGCa -3'
miRNA:   3'- -ACGCGCCGCA----------GGUG--------GCUAAGCA-------------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 61037 0.77 0.343667
Target:  5'- uUGCGCGGCgGUCUugUaa-UCGUACGCg -3'
miRNA:   3'- -ACGCGCCG-CAGGugGcuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 61847 0.67 0.8507
Target:  5'- aGCGUGucuGCG-CCACCGuuauaaaauuuugcgCGUACGCu -3'
miRNA:   3'- aCGCGC---CGCaGGUGGCuaa------------GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 69075 0.67 0.863812
Target:  5'- aGCGUGGCugaGUCCAUCGAcUCGg---- -3'
miRNA:   3'- aCGCGCCG---CAGGUGGCUaAGCaugcg -5'
22879 5' -56.1 NC_005137.2 + 72318 0.68 0.797414
Target:  5'- -aCGCGGCG-CCACUGuc-CGaACGCg -3'
miRNA:   3'- acGCGCCGCaGGUGGCuaaGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 73559 1.12 0.00163
Target:  5'- uUGCGCGGCGUCCACCGAUUCGUACGCg -3'
miRNA:   3'- -ACGCGCCGCAGGUGGCUAAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 76274 0.66 0.898799
Target:  5'- uUGUGC-GCG-CCAaCGAUUCGUACa- -3'
miRNA:   3'- -ACGCGcCGCaGGUgGCUAAGCAUGcg -5'
22879 5' -56.1 NC_005137.2 + 77957 0.66 0.878467
Target:  5'- cGCGCaccuuauucacGGUGUuuGCCGAguUUCGUGC-Ca -3'
miRNA:   3'- aCGCG-----------CCGCAggUGGCU--AAGCAUGcG- -5'
22879 5' -56.1 NC_005137.2 + 78722 0.67 0.863812
Target:  5'- gGCuGCGGC-UUCGgCGAUaaGUGCGCg -3'
miRNA:   3'- aCG-CGCCGcAGGUgGCUAagCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 79677 0.67 0.863812
Target:  5'- gGCGCGGCGgcggacgaccCCGCUGcgUUacuugGCGCa -3'
miRNA:   3'- aCGCGCCGCa---------GGUGGCuaAGca---UGCG- -5'
22879 5' -56.1 NC_005137.2 + 82130 0.7 0.721564
Target:  5'- aGCGCGGCGcaguacauguUCCagcaguacACCGAguacgcggCGUugGCu -3'
miRNA:   3'- aCGCGCCGC----------AGG--------UGGCUaa------GCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 83978 0.66 0.898799
Target:  5'- gGUGCaGGCGUCCAUgaCGGagCGacagauUGCGCg -3'
miRNA:   3'- aCGCG-CCGCAGGUG--GCUaaGC------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 85333 0.68 0.779166
Target:  5'- cGCGuUGGCG-CCGCCGcccaCGUugGUg -3'
miRNA:   3'- aCGC-GCCGCaGGUGGCuaa-GCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 88024 0.72 0.559543
Target:  5'- gGCGCGGCcaCCGCCGAggCGggccaccACGUg -3'
miRNA:   3'- aCGCGCCGcaGGUGGCUaaGCa------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 88814 0.67 0.840287
Target:  5'- cGCGCGucGCGUCC-CUG--UCGgcggACGCg -3'
miRNA:   3'- aCGCGC--CGCAGGuGGCuaAGCa---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.