miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 1735 0.68 0.82365
Target:  5'- cGCGuCGGCaUCUAUCGcgUUGUGUGCg -3'
miRNA:   3'- aCGC-GCCGcAGGUGGCuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 6011 0.67 0.840287
Target:  5'- gGUGCGGCaUCCcgcCCGAUUUccaACGCa -3'
miRNA:   3'- aCGCGCCGcAGGu--GGCUAAGca-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 10707 0.67 0.85617
Target:  5'- gGCGUucgauGGCGUgCACCGcaUCGcgcACGCg -3'
miRNA:   3'- aCGCG-----CCGCAgGUGGCuaAGCa--UGCG- -5'
22879 5' -56.1 NC_005137.2 + 12954 0.67 0.848326
Target:  5'- cGCuGCGGCGcggCCACaaaCGGUUgGcACGCa -3'
miRNA:   3'- aCG-CGCCGCa--GGUG---GCUAAgCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 15272 0.69 0.760394
Target:  5'- uUGCGUugcaccuuGGCGUCCACUaGUauaUCGU-CGCa -3'
miRNA:   3'- -ACGCG--------CCGCAGGUGGcUA---AGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 18066 0.67 0.832059
Target:  5'- gGCGUGGUGUCCaACCaGAcgcCGUuuauguacACGCa -3'
miRNA:   3'- aCGCGCCGCAGG-UGG-CUaa-GCA--------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 20202 0.73 0.500483
Target:  5'- cGgGCGGCGUCgaUugCGAaagcgCGUACGCu -3'
miRNA:   3'- aCgCGCCGCAG--GugGCUaa---GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 23029 0.69 0.741169
Target:  5'- cUGCGCGcGCGUCaacgcgACCGAUcgCGcaUACGUg -3'
miRNA:   3'- -ACGCGC-CGCAGg-----UGGCUAa-GC--AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 24400 0.67 0.859252
Target:  5'- gGaCGCGGCGUcaggCCGCCGuUucaaauugauagcacUCGUGgGCg -3'
miRNA:   3'- aC-GCGCCGCA----GGUGGCuA---------------AGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 27890 0.72 0.578679
Target:  5'- cGCGUGGCGgcgCCACgGGUcaUCGcccggcaaccaauUGCGCa -3'
miRNA:   3'- aCGCGCCGCa--GGUGgCUA--AGC-------------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31053 0.7 0.691607
Target:  5'- cGCGCGGCcgcggccguuGUCCAacaug-CGUGCGCg -3'
miRNA:   3'- aCGCGCCG----------CAGGUggcuaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31224 0.7 0.711643
Target:  5'- gGuCGCGGCacaCCagcuugaacaugGCCGcgUCGUGCGCg -3'
miRNA:   3'- aC-GCGCCGca-GG------------UGGCuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31690 0.67 0.871247
Target:  5'- cGCGUGGUugugcgGUCgCACCGA--CGUGUGCa -3'
miRNA:   3'- aCGCGCCG------CAG-GUGGCUaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 33741 0.69 0.727481
Target:  5'- cUGCgGCGGCGUUgUACCGAaaacgcauggccaUUGUGCGCg -3'
miRNA:   3'- -ACG-CGCCGCAG-GUGGCUa------------AGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 35528 0.7 0.701654
Target:  5'- cGUGCGGCGcgcaUCCgACCGGUaCGU-UGCa -3'
miRNA:   3'- aCGCGCCGC----AGG-UGGCUAaGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 35836 0.69 0.731409
Target:  5'- gUGCaCGGCGUCaauguGCgGuggcAUUCGUGCGCg -3'
miRNA:   3'- -ACGcGCCGCAGg----UGgC----UAAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 36687 0.68 0.815068
Target:  5'- cGCGUGGUGUUUAUCaAUUUuUACGCg -3'
miRNA:   3'- aCGCGCCGCAGGUGGcUAAGcAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 37544 0.7 0.68151
Target:  5'- gGCGCuGGCG-CgCACCGugccCGUAUGCa -3'
miRNA:   3'- aCGCG-CCGCaG-GUGGCuaa-GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 42183 0.74 0.462673
Target:  5'- aGCGUcGCGUCCGCCGAcagggaCGgcgACGCg -3'
miRNA:   3'- aCGCGcCGCAGGUGGCUaa----GCa--UGCG- -5'
22879 5' -56.1 NC_005137.2 + 43960 0.66 0.90512
Target:  5'- cGgGC-GCGUCCACCGccaugUUGUAcuCGCc -3'
miRNA:   3'- aCgCGcCGCAGGUGGCua---AGCAU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.