miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 24400 0.67 0.859252
Target:  5'- gGaCGCGGCGUcaggCCGCCGuUucaaauugauagcacUCGUGgGCg -3'
miRNA:   3'- aC-GCGCCGCA----GGUGGCuA---------------AGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 72318 0.68 0.797414
Target:  5'- -aCGCGGCG-CCACUGuc-CGaACGCg -3'
miRNA:   3'- acGCGCCGCaGGUGGCuaaGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 36687 0.68 0.815068
Target:  5'- cGCGUGGUGUUUAUCaAUUUuUACGCg -3'
miRNA:   3'- aCGCGCCGCAGGUGGcUAAGcAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 49690 0.68 0.818521
Target:  5'- cGCGCGGCGguaacuacgcgccgcUUgGCCGGUguagguguuUCGUcCGCu -3'
miRNA:   3'- aCGCGCCGC---------------AGgUGGCUA---------AGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 99963 0.67 0.848326
Target:  5'- gGcCGCGGcCG-CgCGCCucUUCGUGCGCc -3'
miRNA:   3'- aC-GCGCC-GCaG-GUGGcuAAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 124962 0.67 0.848326
Target:  5'- -aCGCGGCG-CCGgUGAUggggCGcUGCGCu -3'
miRNA:   3'- acGCGCCGCaGGUgGCUAa---GC-AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 61847 0.67 0.8507
Target:  5'- aGCGUGucuGCG-CCACCGuuauaaaauuuugcgCGUACGCu -3'
miRNA:   3'- aCGCGC---CGCaGGUGGCuaa------------GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 10707 0.67 0.85617
Target:  5'- gGCGUucgauGGCGUgCACCGcaUCGcgcACGCg -3'
miRNA:   3'- aCGCG-----CCGCAgGUGGCuaAGCa--UGCG- -5'
22879 5' -56.1 NC_005137.2 + 95647 0.67 0.85617
Target:  5'- cGUGCGcCGUgCGCCGAcgggcaaGUGCGCc -3'
miRNA:   3'- aCGCGCcGCAgGUGGCUaag----CAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 130314 0.69 0.731409
Target:  5'- cGCGCaaaGGCG-CUACCGA-UCGcaGCGCg -3'
miRNA:   3'- aCGCG---CCGCaGGUGGCUaAGCa-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 33741 0.69 0.727481
Target:  5'- cUGCgGCGGCGUUgUACCGAaaacgcauggccaUUGUGCGCg -3'
miRNA:   3'- -ACG-CGCCGCAG-GUGGCUa------------AGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31224 0.7 0.711643
Target:  5'- gGuCGCGGCacaCCagcuugaacaugGCCGcgUCGUGCGCg -3'
miRNA:   3'- aC-GCGCCGca-GG------------UGGCuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 96421 0.76 0.375342
Target:  5'- cGCGCGGCGacgcgcCCGCCGcgUUGcguuUGCGCg -3'
miRNA:   3'- aCGCGCCGCa-----GGUGGCuaAGC----AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 42183 0.74 0.462673
Target:  5'- aGCGUcGCGUCCGCCGAcagggaCGgcgACGCg -3'
miRNA:   3'- aCGCGcCGCAGGUGGCUaa----GCa--UGCG- -5'
22879 5' -56.1 NC_005137.2 + 58487 0.73 0.528726
Target:  5'- uUGCGCGGCGUuagcuuccagCCACagcuugaaCGGUUCGUccacaaacaaaccGCGCa -3'
miRNA:   3'- -ACGCGCCGCA----------GGUG--------GCUAAGCA-------------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 88024 0.72 0.559543
Target:  5'- gGCGCGGCcaCCGCCGAggCGggccaccACGUg -3'
miRNA:   3'- aCGCGCCGcaGGUGGCUaaGCa------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 27890 0.72 0.578679
Target:  5'- cGCGUGGCGgcgCCACgGGUcaUCGcccggcaaccaauUGCGCa -3'
miRNA:   3'- aCGCGCCGCa--GGUGgCUA--AGC-------------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 101046 0.71 0.630591
Target:  5'- uUGCGCGG-GUCUACgcccUGGUUCGUGaGCg -3'
miRNA:   3'- -ACGCGCCgCAGGUG----GCUAAGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 110543 0.71 0.630591
Target:  5'- gGCGUuggaGGUGcCCGCCGA--UGUGCGCc -3'
miRNA:   3'- aCGCG----CCGCaGGUGGCUaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 104691 0.7 0.668325
Target:  5'- cGCGCGuguuagaguccagcGCG-CCGCCGuuguacgCGUACGCu -3'
miRNA:   3'- aCGCGC--------------CGCaGGUGGCuaa----GCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.