miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 73559 1.12 0.00163
Target:  5'- uUGCGCGGCGUCCACCGAUUCGUACGCg -3'
miRNA:   3'- -ACGCGCCGCAGGUGGCUAAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 61037 0.77 0.343667
Target:  5'- uUGCGCGGCgGUCUugUaa-UCGUACGCg -3'
miRNA:   3'- -ACGCGCCG-CAGGugGcuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 96421 0.76 0.375342
Target:  5'- cGCGCGGCGacgcgcCCGCCGcgUUGcguuUGCGCg -3'
miRNA:   3'- aCGCGCCGCa-----GGUGGCuaAGC----AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 53067 0.74 0.462673
Target:  5'- gUGCGCGGUGUCCACaagucgCGAUgaaGUGCa- -3'
miRNA:   3'- -ACGCGCCGCAGGUG------GCUAag-CAUGcg -5'
22879 5' -56.1 NC_005137.2 + 42183 0.74 0.462673
Target:  5'- aGCGUcGCGUCCGCCGAcagggaCGgcgACGCg -3'
miRNA:   3'- aCGCGcCGCAGGUGGCUaa----GCa--UGCG- -5'
22879 5' -56.1 NC_005137.2 + 20202 0.73 0.500483
Target:  5'- cGgGCGGCGUCgaUugCGAaagcgCGUACGCu -3'
miRNA:   3'- aCgCGCCGCAG--GugGCUaa---GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 58487 0.73 0.528726
Target:  5'- uUGCGCGGCGUuagcuuccagCCACagcuugaaCGGUUCGUccacaaacaaaccGCGCa -3'
miRNA:   3'- -ACGCGCCGCA----------GGUG--------GCUAAGCA-------------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 88024 0.72 0.559543
Target:  5'- gGCGCGGCcaCCGCCGAggCGggccaccACGUg -3'
miRNA:   3'- aCGCGCCGcaGGUGGCUaaGCa------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 27890 0.72 0.578679
Target:  5'- cGCGUGGCGgcgCCACgGGUcaUCGcccggcaaccaauUGCGCa -3'
miRNA:   3'- aCGCGCCGCa--GGUGgCUA--AGC-------------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 96053 0.72 0.588809
Target:  5'- gUGCGCaGCGUUucuugaaCACuCGGcUCGUGCGCa -3'
miRNA:   3'- -ACGCGcCGCAG-------GUG-GCUaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 110543 0.71 0.630591
Target:  5'- gGCGUuggaGGUGcCCGCCGA--UGUGCGCc -3'
miRNA:   3'- aCGCG----CCGCaGGUGGCUaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 101046 0.71 0.630591
Target:  5'- uUGCGCGG-GUCUACgcccUGGUUCGUGaGCg -3'
miRNA:   3'- -ACGCGCCgCAGGUG----GCUAAGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 104691 0.7 0.668325
Target:  5'- cGCGCGuguuagaguccagcGCG-CCGCCGuuguacgCGUACGCu -3'
miRNA:   3'- aCGCGC--------------CGCaGGUGGCuaa----GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 37544 0.7 0.68151
Target:  5'- gGCGCuGGCG-CgCACCGugccCGUAUGCa -3'
miRNA:   3'- aCGCG-CCGCaG-GUGGCuaa-GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31053 0.7 0.691607
Target:  5'- cGCGCGGCcgcggccguuGUCCAacaug-CGUGCGCg -3'
miRNA:   3'- aCGCGCCG----------CAGGUggcuaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 35528 0.7 0.701654
Target:  5'- cGUGCGGCGcgcaUCCgACCGGUaCGU-UGCa -3'
miRNA:   3'- aCGCGCCGC----AGG-UGGCUAaGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 31224 0.7 0.711643
Target:  5'- gGuCGCGGCacaCCagcuugaacaugGCCGcgUCGUGCGCg -3'
miRNA:   3'- aC-GCGCCGca-GG------------UGGCuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 82130 0.7 0.721564
Target:  5'- aGCGCGGCGcaguacauguUCCagcaguacACCGAguacgcggCGUugGCu -3'
miRNA:   3'- aCGCGCCGC----------AGG--------UGGCUaa------GCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 33741 0.69 0.727481
Target:  5'- cUGCgGCGGCGUUgUACCGAaaacgcauggccaUUGUGCGCg -3'
miRNA:   3'- -ACG-CGCCGCAG-GUGGCUa------------AGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 35836 0.69 0.731409
Target:  5'- gUGCaCGGCGUCaauguGCgGuggcAUUCGUGCGCg -3'
miRNA:   3'- -ACGcGCCGCAGg----UGgC----UAAGCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.