miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 88024 0.72 0.559543
Target:  5'- gGCGCGGCcaCCGCCGAggCGggccaccACGUg -3'
miRNA:   3'- aCGCGCCGcaGGUGGCUaaGCa------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 27890 0.72 0.578679
Target:  5'- cGCGUGGCGgcgCCACgGGUcaUCGcccggcaaccaauUGCGCa -3'
miRNA:   3'- aCGCGCCGCa--GGUGgCUA--AGC-------------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 101046 0.71 0.630591
Target:  5'- uUGCGCGG-GUCUACgcccUGGUUCGUGaGCg -3'
miRNA:   3'- -ACGCGCCgCAGGUG----GCUAAGCAUgCG- -5'
22879 5' -56.1 NC_005137.2 + 110543 0.71 0.630591
Target:  5'- gGCGUuggaGGUGcCCGCCGA--UGUGCGCc -3'
miRNA:   3'- aCGCG----CCGCaGGUGGCUaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 72318 0.68 0.797414
Target:  5'- -aCGCGGCG-CCACUGuc-CGaACGCg -3'
miRNA:   3'- acGCGCCGCaGGUGGCuaaGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 130314 0.69 0.731409
Target:  5'- cGCGCaaaGGCG-CUACCGA-UCGcaGCGCg -3'
miRNA:   3'- aCGCG---CCGCaGGUGGCUaAGCa-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 33741 0.69 0.727481
Target:  5'- cUGCgGCGGCGUUgUACCGAaaacgcauggccaUUGUGCGCg -3'
miRNA:   3'- -ACG-CGCCGCAG-GUGGCUa------------AGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 31224 0.7 0.711643
Target:  5'- gGuCGCGGCacaCCagcuugaacaugGCCGcgUCGUGCGCg -3'
miRNA:   3'- aC-GCGCCGca-GG------------UGGCuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 104691 0.7 0.668325
Target:  5'- cGCGCGuguuagaguccagcGCG-CCGCCGuuguacgCGUACGCu -3'
miRNA:   3'- aCGCGC--------------CGCaGGUGGCuaa----GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 12954 0.67 0.848326
Target:  5'- cGCuGCGGCGcggCCACaaaCGGUUgGcACGCa -3'
miRNA:   3'- aCG-CGCCGCa--GGUG---GCUAAgCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 124015 0.67 0.85617
Target:  5'- gUGCcCGGCGaCCGCuCGuccgUGUGCGCc -3'
miRNA:   3'- -ACGcGCCGCaGGUG-GCuaa-GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 69075 0.67 0.863812
Target:  5'- aGCGUGGCugaGUCCAUCGAcUCGg---- -3'
miRNA:   3'- aCGCGCCG---CAGGUGGCUaAGCaugcg -5'
22879 5' -56.1 NC_005137.2 + 54418 0.67 0.871247
Target:  5'- --gGCGGCGUCCAacaCGAgcaugugaUCGgGCGUg -3'
miRNA:   3'- acgCGCCGCAGGUg--GCUa-------AGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 99197 0.67 0.871247
Target:  5'- -aCGCGGCauugggCCGCCGcaUCGcUGCGCc -3'
miRNA:   3'- acGCGCCGca----GGUGGCuaAGC-AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 51398 0.66 0.878467
Target:  5'- aGCGCGGCcgcUCCACUaauuGAUaugCG-ACGCu -3'
miRNA:   3'- aCGCGCCGc--AGGUGG----CUAa--GCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 118090 0.66 0.878467
Target:  5'- aGUGguagaGGCGUuuGCCGAUUa-UGCGCu -3'
miRNA:   3'- aCGCg----CCGCAggUGGCUAAgcAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 91194 0.66 0.898799
Target:  5'- gGCGCGGCGUUUgguuGCaCGcg-UGUugGCc -3'
miRNA:   3'- aCGCGCCGCAGG----UG-GCuaaGCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 76274 0.66 0.898799
Target:  5'- uUGUGC-GCG-CCAaCGAUUCGUACa- -3'
miRNA:   3'- -ACGCGcCGCaGGUgGCUAAGCAUGcg -5'
22879 5' -56.1 NC_005137.2 + 83978 0.66 0.898799
Target:  5'- gGUGCaGGCGUCCAUgaCGGagCGacagauUGCGCg -3'
miRNA:   3'- aCGCG-CCGCAGGUG--GCUaaGC------AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 73559 1.12 0.00163
Target:  5'- uUGCGCGGCGUCCACCGAUUCGUACGCg -3'
miRNA:   3'- -ACGCGCCGCAGGUGGCUAAGCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.