Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2288 | 5' | -63.4 | NC_001407.1 | + | 3208 | 0.66 | 0.076878 |
|
Target: 5'- cCCGUaGGCCUGGuagcagaaCCCagGAuaGCCACCUuGUg -3' miRNA: 3'- -GGCA-CCGGGCC--------GGGa-CU--CGGUGGA-CG- -5' |
|||||||
| 2288 | 5' | -63.4 | NC_001407.1 | + | 2096 | 0.66 | 0.074529 |
|
Target: 5'- gCCG-GGCCaCGGCCCcgaagaGAGaCCuuuuCCUGg -3' miRNA: 3'- -GGCaCCGG-GCCGGGa-----CUC-GGu---GGACg -5' |
|||||||
| 2288 | 5' | -63.4 | NC_001407.1 | + | 7300 | 0.68 | 0.04375 |
|
Target: 5'- uCgGUGGCCaCGGuCCCgaagGAGCgGCUgggguUGCg -3' miRNA: 3'- -GgCACCGG-GCC-GGGa---CUCGgUGG-----ACG- -5' |
|||||||
| 2288 | 5' | -63.4 | NC_001407.1 | + | 1043 | 0.69 | 0.04239 |
|
Target: 5'- ---aGGgCCGGCCCagGAGCCugACCcGCa -3' miRNA: 3'- ggcaCCgGGCCGGGa-CUCGG--UGGaCG- -5' |
|||||||
| 2288 | 5' | -63.4 | NC_001407.1 | + | 2075 | 1.11 | 8e-06 |
|
Target: 5'- gCCGUGGCCCGGCCCUGAGCCACCUGCc -3' miRNA: 3'- -GGCACCGGGCCGGGACUCGGUGGACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home