miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 30487 0.68 0.986436
Target:  5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3'
miRNA:   3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 22847 0.69 0.974865
Target:  5'- -gGCGGGCGCG-CGcAUACcgacgCCGCc -3'
miRNA:   3'- ggUGCUCGCGCaGCuUAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 110417 0.69 0.974865
Target:  5'- uCCACGuaCGCGUCGAcgGuCAUgUCGCg -3'
miRNA:   3'- -GGUGCucGCGCAGCUuaU-GUAaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 42500 0.69 0.974865
Target:  5'- aCACG-GCGCuugcugcgCGGcgACAUUCCGUc -3'
miRNA:   3'- gGUGCuCGCGca------GCUuaUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 35714 0.69 0.969138
Target:  5'- -aACGGGCGCGUUGucGUGCuuaaUCGCg -3'
miRNA:   3'- ggUGCUCGCGCAGCu-UAUGuaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 75256 0.69 0.972108
Target:  5'- aCCGCGGGCGC-UUGAAauccACGUucUCCGg -3'
miRNA:   3'- -GGUGCUCGCGcAGCUUa---UGUA--AGGCg -5'
22880 3' -50.4 NC_005137.2 + 34707 0.69 0.962537
Target:  5'- gCGCGccGGCGUGUCGGcgaAUGCAcgcgUCCGa -3'
miRNA:   3'- gGUGC--UCGCGCAGCU---UAUGUa---AGGCg -5'
22880 3' -50.4 NC_005137.2 + 1482 0.7 0.94191
Target:  5'- aCuCGaAGCGCuUCcGGUACAUUCCGCc -3'
miRNA:   3'- gGuGC-UCGCGcAGcUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 80171 0.7 0.958893
Target:  5'- gCCGCcGuuuGCGCGUUGuuaauguuGUGCAgcauUUCCGCa -3'
miRNA:   3'- -GGUG-Cu--CGCGCAGCu-------UAUGU----AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 124395 0.7 0.955411
Target:  5'- gCUGCGcGCGCGUCGuuucagcgcgcaguuGUACAagUUCUGCu -3'
miRNA:   3'- -GGUGCuCGCGCAGCu--------------UAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108111 0.7 0.955012
Target:  5'- aCGCGuuGCGCGcCGAucGCAgcaCCGCa -3'
miRNA:   3'- gGUGCu-CGCGCaGCUuaUGUaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 112223 0.7 0.950891
Target:  5'- -aACGuGCGCGcagugaugaUUGAAcgcgGCGUUCCGCg -3'
miRNA:   3'- ggUGCuCGCGC---------AGCUUa---UGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30970 0.7 0.946525
Target:  5'- gCCGCGcGcCGCGUCGGAccgcgugcuUGCGcaCCGCu -3'
miRNA:   3'- -GGUGCuC-GCGCAGCUU---------AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 79725 0.71 0.937045
Target:  5'- aUACGGGCGCGuUUGAAUgguaacaaaccaACGUUgCGCc -3'
miRNA:   3'- gGUGCUCGCGC-AGCUUA------------UGUAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 82124 0.71 0.931927
Target:  5'- gCCGCcAGCGCGgCGcAGUACAUguUCCaGCa -3'
miRNA:   3'- -GGUGcUCGCGCaGC-UUAUGUA--AGG-CG- -5'
22880 3' -50.4 NC_005137.2 + 96546 0.71 0.926005
Target:  5'- uCCAauuGCGCGUCGggUugGccaccuuUUCUGCu -3'
miRNA:   3'- -GGUgcuCGCGCAGCuuAugU-------AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 12876 0.71 0.92093
Target:  5'- aUCACGGGCGCGgggCGAA-ACAgguggCCGa -3'
miRNA:   3'- -GGUGCUCGCGCa--GCUUaUGUaa---GGCg -5'
22880 3' -50.4 NC_005137.2 + 31719 0.71 0.937045
Target:  5'- gCACGuuCGCGUCGuuucgcGUGCGUauagCCGCg -3'
miRNA:   3'- gGUGCucGCGCAGCu-----UAUGUAa---GGCG- -5'
22880 3' -50.4 NC_005137.2 + 119540 0.72 0.881922
Target:  5'- uCCGCuGA-CGUGUCGAGUGCGUUuaGCc -3'
miRNA:   3'- -GGUG-CUcGCGCAGCUUAUGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 110429 0.72 0.90892
Target:  5'- -aACGGGCGCGaCGGugagcGUGCAcaCCGCg -3'
miRNA:   3'- ggUGCUCGCGCaGCU-----UAUGUaaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.