miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 99334 0.67 0.991027
Target:  5'- aCCACGcGGCgGUGUCGuccgcuAUGCAcagcguggucgcgUCCGCg -3'
miRNA:   3'- -GGUGC-UCG-CGCAGCu-----UAUGUa------------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30747 0.67 0.991502
Target:  5'- gCCGCGAcGCGCG-CccGUGCGUUgCgGCg -3'
miRNA:   3'- -GGUGCU-CGCGCaGcuUAUGUAA-GgCG- -5'
22880 3' -50.4 NC_005137.2 + 33672 0.67 0.991502
Target:  5'- gCCugGAGCGCGUUGcgucuUugAg--CGCa -3'
miRNA:   3'- -GGugCUCGCGCAGCuu---AugUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 8415 0.67 0.991502
Target:  5'- uCCGCG-GCGUGUUucaggGCAUuaacgaUCCGCa -3'
miRNA:   3'- -GGUGCuCGCGCAGcuua-UGUA------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 107963 0.67 0.991502
Target:  5'- gUCACGuauGCGCGaUCGGucGCGUUgaCGCg -3'
miRNA:   3'- -GGUGCu--CGCGC-AGCUuaUGUAAg-GCG- -5'
22880 3' -50.4 NC_005137.2 + 88868 0.67 0.988915
Target:  5'- uCCACGGcgguuccaCGCGUCGAAcGCAgcgUUCGUu -3'
miRNA:   3'- -GGUGCUc-------GCGCAGCUUaUGUa--AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 95499 0.67 0.988915
Target:  5'- gCACGGGCGCaUCGcugACGUggCCGg -3'
miRNA:   3'- gGUGCUCGCGcAGCuuaUGUAa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 88511 0.67 0.988915
Target:  5'- gCCGCGcAGCaaGCGcCGuGUGCGUUCC-Ca -3'
miRNA:   3'- -GGUGC-UCG--CGCaGCuUAUGUAAGGcG- -5'
22880 3' -50.4 NC_005137.2 + 23085 0.67 0.987411
Target:  5'- aCACG-GCGCGUU------GUUCCGCg -3'
miRNA:   3'- gGUGCuCGCGCAGcuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97918 0.67 0.990276
Target:  5'- aCCACcuugucguuGGGCGUGUCaAGUACuugCUGCa -3'
miRNA:   3'- -GGUG---------CUCGCGCAGcUUAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 115298 0.67 0.990276
Target:  5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3'
miRNA:   3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 39381 0.68 0.981946
Target:  5'- aCGCaAGUGUGUCGAuugACA--CCGCa -3'
miRNA:   3'- gGUGcUCGCGCAGCUua-UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 21618 0.68 0.983935
Target:  5'- aCACccAGCGCGUCGAAcUAUuuuGUUgCGCa -3'
miRNA:   3'- gGUGc-UCGCGCAGCUU-AUG---UAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 57565 0.68 0.979776
Target:  5'- gCCGCGuuuagaaCGCGUCGAGcccaGCGcgCCGCa -3'
miRNA:   3'- -GGUGCuc-----GCGCAGCUUa---UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97986 0.68 0.979776
Target:  5'- -aACGGGCGCGcggcgUGggUGCGc-CCGCc -3'
miRNA:   3'- ggUGCUCGCGCa----GCuuAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 63709 0.68 0.981946
Target:  5'- -uGCGGGCGaCGUCaaauUGCGUUgcCCGCa -3'
miRNA:   3'- ggUGCUCGC-GCAGcuu-AUGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 32802 0.68 0.981946
Target:  5'- aCACa---GCGUCGAAUACGUgcCCGUg -3'
miRNA:   3'- gGUGcucgCGCAGCUUAUGUAa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 123847 0.68 0.983935
Target:  5'- aCUGUGAGCGCG-CGGcuUACAcgCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCaGCUu-AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30487 0.68 0.986436
Target:  5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3'
miRNA:   3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 20198 0.68 0.981946
Target:  5'- uCgGCGGGCgGCGUCGAuUGCGaaagCGCg -3'
miRNA:   3'- -GgUGCUCG-CGCAGCUuAUGUaag-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.