miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 12876 0.71 0.92093
Target:  5'- aUCACGGGCGCGgggCGAA-ACAgguggCCGa -3'
miRNA:   3'- -GGUGCUCGCGCa--GCUUaUGUaa---GGCg -5'
22880 3' -50.4 NC_005137.2 + 110429 0.72 0.90892
Target:  5'- -aACGGGCGCGaCGGugagcGUGCAcaCCGCg -3'
miRNA:   3'- ggUGCUCGCGCaGCU-----UAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 119540 0.72 0.881922
Target:  5'- uCCGCuGA-CGUGUCGAGUGCGUUuaGCc -3'
miRNA:   3'- -GGUG-CUcGCGCAGCUUAUGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 11365 0.73 0.866993
Target:  5'- gCCACGAGCGCGU---------UCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCAgcuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 33190 0.73 0.850353
Target:  5'- aCACGGgucaauuGCGCGUCGAAgaGCGcaCCGCg -3'
miRNA:   3'- gGUGCU-------CGCGCAGCUUa-UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 60852 0.73 0.842934
Target:  5'- uUACGGGCGCGUCGu---CGUUaaGCg -3'
miRNA:   3'- gGUGCUCGCGCAGCuuauGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 108317 0.75 0.740862
Target:  5'- --uUGAGCGCGUUGGGgcUACAUUCgGCc -3'
miRNA:   3'- gguGCUCGCGCAGCUU--AUGUAAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 100265 0.77 0.679213
Target:  5'- gCACGGgcGCGCGUCGcg-GCAUUCaCGCc -3'
miRNA:   3'- gGUGCU--CGCGCAGCuuaUGUAAG-GCG- -5'
22880 3' -50.4 NC_005137.2 + 31719 0.71 0.937045
Target:  5'- gCACGuuCGCGUCGuuucgcGUGCGUauagCCGCg -3'
miRNA:   3'- gGUGCucGCGCAGCu-----UAUGUAa---GGCG- -5'
22880 3' -50.4 NC_005137.2 + 1482 0.7 0.94191
Target:  5'- aCuCGaAGCGCuUCcGGUACAUUCCGCc -3'
miRNA:   3'- gGuGC-UCGCGcAGcUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97986 0.68 0.979776
Target:  5'- -aACGGGCGCGcggcgUGggUGCGc-CCGCc -3'
miRNA:   3'- ggUGCUCGCGCa----GCuuAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 57565 0.68 0.979776
Target:  5'- gCCGCGuuuagaaCGCGUCGAGcccaGCGcgCCGCa -3'
miRNA:   3'- -GGUGCuc-----GCGCAGCUUa---UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 75256 0.69 0.972108
Target:  5'- aCCGCGGGCGC-UUGAAauccACGUucUCCGg -3'
miRNA:   3'- -GGUGCUCGCGcAGCUUa---UGUA--AGGCg -5'
22880 3' -50.4 NC_005137.2 + 35714 0.69 0.969138
Target:  5'- -aACGGGCGCGUUGucGUGCuuaaUCGCg -3'
miRNA:   3'- ggUGCUCGCGCAGCu-UAUGuaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 80171 0.7 0.958893
Target:  5'- gCCGCcGuuuGCGCGUUGuuaauguuGUGCAgcauUUCCGCa -3'
miRNA:   3'- -GGUG-Cu--CGCGCAGCu-------UAUGU----AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 124395 0.7 0.955411
Target:  5'- gCUGCGcGCGCGUCGuuucagcgcgcaguuGUACAagUUCUGCu -3'
miRNA:   3'- -GGUGCuCGCGCAGCu--------------UAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108111 0.7 0.955012
Target:  5'- aCGCGuuGCGCGcCGAucGCAgcaCCGCa -3'
miRNA:   3'- gGUGCu-CGCGCaGCUuaUGUaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 112223 0.7 0.950891
Target:  5'- -aACGuGCGCGcagugaugaUUGAAcgcgGCGUUCCGCg -3'
miRNA:   3'- ggUGCuCGCGC---------AGCUUa---UGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 70120 1.15 0.004357
Target:  5'- aCCACGAGCGCGUCGAAUACAUUCCGCu -3'
miRNA:   3'- -GGUGCUCGCGCAGCUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 74282 0.66 0.996527
Target:  5'- uUCGCGcaugauaagaGGCGCGUUGAGU-CGUUCuugaucguuuuCGCg -3'
miRNA:   3'- -GGUGC----------UCGCGCAGCUUAuGUAAG-----------GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.