miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 108111 0.7 0.955012
Target:  5'- aCGCGuuGCGCGcCGAucGCAgcaCCGCa -3'
miRNA:   3'- gGUGCu-CGCGCaGCUuaUGUaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 124395 0.7 0.955411
Target:  5'- gCUGCGcGCGCGUCGuuucagcgcgcaguuGUACAagUUCUGCu -3'
miRNA:   3'- -GGUGCuCGCGCAGCu--------------UAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 80171 0.7 0.958893
Target:  5'- gCCGCcGuuuGCGCGUUGuuaauguuGUGCAgcauUUCCGCa -3'
miRNA:   3'- -GGUG-Cu--CGCGCAGCu-------UAUGU----AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 34707 0.69 0.962537
Target:  5'- gCGCGccGGCGUGUCGGcgaAUGCAcgcgUCCGa -3'
miRNA:   3'- gGUGC--UCGCGCAGCU---UAUGUa---AGGCg -5'
22880 3' -50.4 NC_005137.2 + 35714 0.69 0.969138
Target:  5'- -aACGGGCGCGUUGucGUGCuuaaUCGCg -3'
miRNA:   3'- ggUGCUCGCGCAGCu-UAUGuaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 75256 0.69 0.972108
Target:  5'- aCCGCGGGCGC-UUGAAauccACGUucUCCGg -3'
miRNA:   3'- -GGUGCUCGCGcAGCUUa---UGUA--AGGCg -5'
22880 3' -50.4 NC_005137.2 + 110417 0.69 0.974865
Target:  5'- uCCACGuaCGCGUCGAcgGuCAUgUCGCg -3'
miRNA:   3'- -GGUGCucGCGCAGCUuaU-GUAaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 22847 0.69 0.974865
Target:  5'- -gGCGGGCGCG-CGcAUACcgacgCCGCc -3'
miRNA:   3'- ggUGCUCGCGCaGCuUAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 42500 0.69 0.974865
Target:  5'- aCACG-GCGCuugcugcgCGGcgACAUUCCGUc -3'
miRNA:   3'- gGUGCuCGCGca------GCUuaUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 57565 0.68 0.979776
Target:  5'- gCCGCGuuuagaaCGCGUCGAGcccaGCGcgCCGCa -3'
miRNA:   3'- -GGUGCuc-----GCGCAGCUUa---UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97986 0.68 0.979776
Target:  5'- -aACGGGCGCGcggcgUGggUGCGc-CCGCc -3'
miRNA:   3'- ggUGCUCGCGCa----GCuuAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 34589 0.68 0.981737
Target:  5'- gCgGCGGGCGCGUCGccgcgcgGGUaGCggUCgGCg -3'
miRNA:   3'- -GgUGCUCGCGCAGC-------UUA-UGuaAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 32802 0.68 0.981946
Target:  5'- aCACa---GCGUCGAAUACGUgcCCGUg -3'
miRNA:   3'- gGUGcucgCGCAGCUUAUGUAa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 39381 0.68 0.981946
Target:  5'- aCGCaAGUGUGUCGAuugACA--CCGCa -3'
miRNA:   3'- gGUGcUCGCGCAGCUua-UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 63709 0.68 0.981946
Target:  5'- -uGCGGGCGaCGUCaaauUGCGUUgcCCGCa -3'
miRNA:   3'- ggUGCUCGC-GCAGcuu-AUGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 20198 0.68 0.981946
Target:  5'- uCgGCGGGCgGCGUCGAuUGCGaaagCGCg -3'
miRNA:   3'- -GgUGCUCG-CGCAGCUuAUGUaag-GCG- -5'
22880 3' -50.4 NC_005137.2 + 21618 0.68 0.983935
Target:  5'- aCACccAGCGCGUCGAAcUAUuuuGUUgCGCa -3'
miRNA:   3'- gGUGc-UCGCGCAGCUU-AUG---UAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 123847 0.68 0.983935
Target:  5'- aCUGUGAGCGCG-CGGcuUACAcgCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCaGCUu-AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30487 0.68 0.986436
Target:  5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3'
miRNA:   3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 23085 0.67 0.987411
Target:  5'- aCACG-GCGCGUU------GUUCCGCg -3'
miRNA:   3'- gGUGCuCGCGCAGcuuaugUAAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.