miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 70120 1.15 0.004357
Target:  5'- aCCACGAGCGCGUCGAAUACAUUCCGCu -3'
miRNA:   3'- -GGUGCUCGCGCAGCUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 100265 0.77 0.679213
Target:  5'- gCACGGgcGCGCGUCGcg-GCAUUCaCGCc -3'
miRNA:   3'- gGUGCU--CGCGCAGCuuaUGUAAG-GCG- -5'
22880 3' -50.4 NC_005137.2 + 67356 0.76 0.689648
Target:  5'- aCCGCGGGCGCGaCGcGAUGCGcgaccgucgCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCaGC-UUAUGUaa-------GGCG- -5'
22880 3' -50.4 NC_005137.2 + 22435 0.76 0.700032
Target:  5'- aCACGGGCGCGccgcCGAucacGUACAUuugCCGCu -3'
miRNA:   3'- gGUGCUCGCGCa---GCU----UAUGUAa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 108317 0.75 0.740862
Target:  5'- --uUGAGCGCGUUGGGgcUACAUUCgGCc -3'
miRNA:   3'- gguGCUCGCGCAGCUU--AUGUAAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 128693 0.75 0.759731
Target:  5'- uCCACGAGCGCGuugcggUCGAggaacccaaaacgAUGCAcaUCCGUg -3'
miRNA:   3'- -GGUGCUCGCGC------AGCU-------------UAUGUa-AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 51071 0.74 0.798884
Target:  5'- aCCAUGAGCGUGaUCGAcGUGCAcauaCGCa -3'
miRNA:   3'- -GGUGCUCGCGC-AGCU-UAUGUaag-GCG- -5'
22880 3' -50.4 NC_005137.2 + 60852 0.73 0.842934
Target:  5'- uUACGGGCGCGUCGu---CGUUaaGCg -3'
miRNA:   3'- gGUGCUCGCGCAGCuuauGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 33190 0.73 0.850353
Target:  5'- aCACGGgucaauuGCGCGUCGAAgaGCGcaCCGCg -3'
miRNA:   3'- gGUGCU-------CGCGCAGCUUa-UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 11365 0.73 0.866993
Target:  5'- gCCACGAGCGCGU---------UCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCAgcuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 119540 0.72 0.881922
Target:  5'- uCCGCuGA-CGUGUCGAGUGCGUUuaGCc -3'
miRNA:   3'- -GGUG-CUcGCGCAGCUUAUGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 110429 0.72 0.90892
Target:  5'- -aACGGGCGCGaCGGugagcGUGCAcaCCGCg -3'
miRNA:   3'- ggUGCUCGCGCaGCU-----UAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 12876 0.71 0.92093
Target:  5'- aUCACGGGCGCGgggCGAA-ACAgguggCCGa -3'
miRNA:   3'- -GGUGCUCGCGCa--GCUUaUGUaa---GGCg -5'
22880 3' -50.4 NC_005137.2 + 96546 0.71 0.926005
Target:  5'- uCCAauuGCGCGUCGggUugGccaccuuUUCUGCu -3'
miRNA:   3'- -GGUgcuCGCGCAGCuuAugU-------AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 82124 0.71 0.931927
Target:  5'- gCCGCcAGCGCGgCGcAGUACAUguUCCaGCa -3'
miRNA:   3'- -GGUGcUCGCGCaGC-UUAUGUA--AGG-CG- -5'
22880 3' -50.4 NC_005137.2 + 79725 0.71 0.937045
Target:  5'- aUACGGGCGCGuUUGAAUgguaacaaaccaACGUUgCGCc -3'
miRNA:   3'- gGUGCUCGCGC-AGCUUA------------UGUAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 31719 0.71 0.937045
Target:  5'- gCACGuuCGCGUCGuuucgcGUGCGUauagCCGCg -3'
miRNA:   3'- gGUGCucGCGCAGCu-----UAUGUAa---GGCG- -5'
22880 3' -50.4 NC_005137.2 + 1482 0.7 0.94191
Target:  5'- aCuCGaAGCGCuUCcGGUACAUUCCGCc -3'
miRNA:   3'- gGuGC-UCGCGcAGcUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30970 0.7 0.946525
Target:  5'- gCCGCGcGcCGCGUCGGAccgcgugcuUGCGcaCCGCu -3'
miRNA:   3'- -GGUGCuC-GCGCAGCUU---------AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 112223 0.7 0.950891
Target:  5'- -aACGuGCGCGcagugaugaUUGAAcgcgGCGUUCCGCg -3'
miRNA:   3'- ggUGCuCGCGC---------AGCUUa---UGUAAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.