miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 26454 0.66 0.996527
Target:  5'- -gACGAGUGCuuccgCGAcaACGUgggCCGCg -3'
miRNA:   3'- ggUGCUCGCGca---GCUuaUGUAa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 74282 0.66 0.996527
Target:  5'- uUCGCGcaugauaagaGGCGCGUUGAGU-CGUUCuugaucguuuuCGCg -3'
miRNA:   3'- -GGUGC----------UCGCGCAGCUUAuGUAAG-----------GCG- -5'
22880 3' -50.4 NC_005137.2 + 49213 0.66 0.996527
Target:  5'- aCGCGAcGCGCGaCGcaaaaacucuAGUGCggUUCGCa -3'
miRNA:   3'- gGUGCU-CGCGCaGC----------UUAUGuaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 96487 0.66 0.996527
Target:  5'- aCACGGuGCGCGUCGuGUccACGgg-CGCu -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUA--UGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 78650 0.66 0.996527
Target:  5'- aCUGCGAGuUGUGUCaAAUGCGUgUCgGCu -3'
miRNA:   3'- -GGUGCUC-GCGCAGcUUAUGUA-AGgCG- -5'
22880 3' -50.4 NC_005137.2 + 87189 0.66 0.995925
Target:  5'- uCgACGGGCGCGggCGGcUGCucgugCCGUc -3'
miRNA:   3'- -GgUGCUCGCGCa-GCUuAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 36035 0.66 0.995925
Target:  5'- aCACGGGCGCGggcguuaaaagCGuuguUGCAUacCCGUg -3'
miRNA:   3'- gGUGCUCGCGCa----------GCuu--AUGUAa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 16073 0.66 0.995239
Target:  5'- -aGCGAGCGCGUUGGcuUGCAaaUUCaGUu -3'
miRNA:   3'- ggUGCUCGCGCAGCUu-AUGU--AAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 22266 0.66 0.995239
Target:  5'- -aACGAuGCGCGUCGuuug---UCUGCg -3'
miRNA:   3'- ggUGCU-CGCGCAGCuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108754 0.66 0.995239
Target:  5'- uUCGgGAGCGCGcUGcucaaAGUGCAcuUUCCGUg -3'
miRNA:   3'- -GGUgCUCGCGCaGC-----UUAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 43567 0.66 0.995239
Target:  5'- -uGCGGGCGCa-CGAAUGCGUaCUGg -3'
miRNA:   3'- ggUGCUCGCGcaGCUUAUGUAaGGCg -5'
22880 3' -50.4 NC_005137.2 + 7867 0.66 0.994784
Target:  5'- uCCACGAGCGUGcCGucacguaggaaaacGUGCAcaCCGg -3'
miRNA:   3'- -GGUGCUCGCGCaGCu-------------UAUGUaaGGCg -5'
22880 3' -50.4 NC_005137.2 + 45110 0.66 0.994462
Target:  5'- cUCGCGGGCGCG-CGAc-GCG--UCGCa -3'
miRNA:   3'- -GGUGCUCGCGCaGCUuaUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 47425 0.66 0.994462
Target:  5'- gCCAUcAGUGCGUUGuuuUGCGUUaccaaCGCg -3'
miRNA:   3'- -GGUGcUCGCGCAGCuu-AUGUAAg----GCG- -5'
22880 3' -50.4 NC_005137.2 + 31079 0.66 0.994295
Target:  5'- -uGCGuGCGCGUCGccgauGAUGCGUggauuagcgaagCUGCu -3'
miRNA:   3'- ggUGCuCGCGCAGC-----UUAUGUAa-----------GGCG- -5'
22880 3' -50.4 NC_005137.2 + 90389 0.66 0.993586
Target:  5'- gCCAaGAGCGCGUCcacGUugGUcgUCGCc -3'
miRNA:   3'- -GGUgCUCGCGCAGcu-UAugUAa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 2082 0.66 0.993586
Target:  5'- aUCACGGGCGCGUUGGcug---UCCu- -3'
miRNA:   3'- -GGUGCUCGCGCAGCUuauguaAGGcg -5'
22880 3' -50.4 NC_005137.2 + 87503 0.67 0.992602
Target:  5'- uCgACGAGCGUGauaUCGu----GUUCCGCa -3'
miRNA:   3'- -GgUGCUCGCGC---AGCuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 38341 0.67 0.992602
Target:  5'- -gGCGuaagcAGCGCGUUGAcagugGCGUUgaCCGCa -3'
miRNA:   3'- ggUGC-----UCGCGCAGCUua---UGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 107963 0.67 0.991502
Target:  5'- gUCACGuauGCGCGaUCGGucGCGUUgaCGCg -3'
miRNA:   3'- -GGUGCu--CGCGC-AGCUuaUGUAAg-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.