miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 1482 0.7 0.94191
Target:  5'- aCuCGaAGCGCuUCcGGUACAUUCCGCc -3'
miRNA:   3'- gGuGC-UCGCGcAGcUUAUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 2082 0.66 0.993586
Target:  5'- aUCACGGGCGCGUUGGcug---UCCu- -3'
miRNA:   3'- -GGUGCUCGCGCAGCUuauguaAGGcg -5'
22880 3' -50.4 NC_005137.2 + 7867 0.66 0.994784
Target:  5'- uCCACGAGCGUGcCGucacguaggaaaacGUGCAcaCCGg -3'
miRNA:   3'- -GGUGCUCGCGCaGCu-------------UAUGUaaGGCg -5'
22880 3' -50.4 NC_005137.2 + 8415 0.67 0.991502
Target:  5'- uCCGCG-GCGUGUUucaggGCAUuaacgaUCCGCa -3'
miRNA:   3'- -GGUGCuCGCGCAGcuua-UGUA------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 11365 0.73 0.866993
Target:  5'- gCCACGAGCGCGU---------UCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCAgcuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 12876 0.71 0.92093
Target:  5'- aUCACGGGCGCGgggCGAA-ACAgguggCCGa -3'
miRNA:   3'- -GGUGCUCGCGCa--GCUUaUGUaa---GGCg -5'
22880 3' -50.4 NC_005137.2 + 16073 0.66 0.995239
Target:  5'- -aGCGAGCGCGUUGGcuUGCAaaUUCaGUu -3'
miRNA:   3'- ggUGCUCGCGCAGCUu-AUGU--AAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 20198 0.68 0.981946
Target:  5'- uCgGCGGGCgGCGUCGAuUGCGaaagCGCg -3'
miRNA:   3'- -GgUGCUCG-CGCAGCUuAUGUaag-GCG- -5'
22880 3' -50.4 NC_005137.2 + 21618 0.68 0.983935
Target:  5'- aCACccAGCGCGUCGAAcUAUuuuGUUgCGCa -3'
miRNA:   3'- gGUGc-UCGCGCAGCUU-AUG---UAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 22266 0.66 0.995239
Target:  5'- -aACGAuGCGCGUCGuuug---UCUGCg -3'
miRNA:   3'- ggUGCU-CGCGCAGCuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 22435 0.76 0.700032
Target:  5'- aCACGGGCGCGccgcCGAucacGUACAUuugCCGCu -3'
miRNA:   3'- gGUGCUCGCGCa---GCU----UAUGUAa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 22847 0.69 0.974865
Target:  5'- -gGCGGGCGCG-CGcAUACcgacgCCGCc -3'
miRNA:   3'- ggUGCUCGCGCaGCuUAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 23085 0.67 0.987411
Target:  5'- aCACG-GCGCGUU------GUUCCGCg -3'
miRNA:   3'- gGUGCuCGCGCAGcuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 26454 0.66 0.996527
Target:  5'- -gACGAGUGCuuccgCGAcaACGUgggCCGCg -3'
miRNA:   3'- ggUGCUCGCGca---GCUuaUGUAa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 30487 0.68 0.986436
Target:  5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3'
miRNA:   3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 30747 0.67 0.991502
Target:  5'- gCCGCGAcGCGCG-CccGUGCGUUgCgGCg -3'
miRNA:   3'- -GGUGCU-CGCGCaGcuUAUGUAA-GgCG- -5'
22880 3' -50.4 NC_005137.2 + 30970 0.7 0.946525
Target:  5'- gCCGCGcGcCGCGUCGGAccgcgugcuUGCGcaCCGCu -3'
miRNA:   3'- -GGUGCuC-GCGCAGCUU---------AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 31079 0.66 0.994295
Target:  5'- -uGCGuGCGCGUCGccgauGAUGCGUggauuagcgaagCUGCu -3'
miRNA:   3'- ggUGCuCGCGCAGC-----UUAUGUAa-----------GGCG- -5'
22880 3' -50.4 NC_005137.2 + 31719 0.71 0.937045
Target:  5'- gCACGuuCGCGUCGuuucgcGUGCGUauagCCGCg -3'
miRNA:   3'- gGUGCucGCGCAGCu-----UAUGUAa---GGCG- -5'
22880 3' -50.4 NC_005137.2 + 32802 0.68 0.981946
Target:  5'- aCACa---GCGUCGAAUACGUgcCCGUg -3'
miRNA:   3'- gGUGcucgCGCAGCUUAUGUAa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.