Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 1482 | 0.7 | 0.94191 |
Target: 5'- aCuCGaAGCGCuUCcGGUACAUUCCGCc -3' miRNA: 3'- gGuGC-UCGCGcAGcUUAUGUAAGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 2082 | 0.66 | 0.993586 |
Target: 5'- aUCACGGGCGCGUUGGcug---UCCu- -3' miRNA: 3'- -GGUGCUCGCGCAGCUuauguaAGGcg -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 7867 | 0.66 | 0.994784 |
Target: 5'- uCCACGAGCGUGcCGucacguaggaaaacGUGCAcaCCGg -3' miRNA: 3'- -GGUGCUCGCGCaGCu-------------UAUGUaaGGCg -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 8415 | 0.67 | 0.991502 |
Target: 5'- uCCGCG-GCGUGUUucaggGCAUuaacgaUCCGCa -3' miRNA: 3'- -GGUGCuCGCGCAGcuua-UGUA------AGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 11365 | 0.73 | 0.866993 |
Target: 5'- gCCACGAGCGCGU---------UCCGCg -3' miRNA: 3'- -GGUGCUCGCGCAgcuuauguaAGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 12876 | 0.71 | 0.92093 |
Target: 5'- aUCACGGGCGCGgggCGAA-ACAgguggCCGa -3' miRNA: 3'- -GGUGCUCGCGCa--GCUUaUGUaa---GGCg -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 16073 | 0.66 | 0.995239 |
Target: 5'- -aGCGAGCGCGUUGGcuUGCAaaUUCaGUu -3' miRNA: 3'- ggUGCUCGCGCAGCUu-AUGU--AAGgCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 20198 | 0.68 | 0.981946 |
Target: 5'- uCgGCGGGCgGCGUCGAuUGCGaaagCGCg -3' miRNA: 3'- -GgUGCUCG-CGCAGCUuAUGUaag-GCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 21618 | 0.68 | 0.983935 |
Target: 5'- aCACccAGCGCGUCGAAcUAUuuuGUUgCGCa -3' miRNA: 3'- gGUGc-UCGCGCAGCUU-AUG---UAAgGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 22266 | 0.66 | 0.995239 |
Target: 5'- -aACGAuGCGCGUCGuuug---UCUGCg -3' miRNA: 3'- ggUGCU-CGCGCAGCuuauguaAGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 22435 | 0.76 | 0.700032 |
Target: 5'- aCACGGGCGCGccgcCGAucacGUACAUuugCCGCu -3' miRNA: 3'- gGUGCUCGCGCa---GCU----UAUGUAa--GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 22847 | 0.69 | 0.974865 |
Target: 5'- -gGCGGGCGCG-CGcAUACcgacgCCGCc -3' miRNA: 3'- ggUGCUCGCGCaGCuUAUGuaa--GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 23085 | 0.67 | 0.987411 |
Target: 5'- aCACG-GCGCGUU------GUUCCGCg -3' miRNA: 3'- gGUGCuCGCGCAGcuuaugUAAGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 26454 | 0.66 | 0.996527 |
Target: 5'- -gACGAGUGCuuccgCGAcaACGUgggCCGCg -3' miRNA: 3'- ggUGCUCGCGca---GCUuaUGUAa--GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 30487 | 0.68 | 0.986436 |
Target: 5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3' miRNA: 3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 30747 | 0.67 | 0.991502 |
Target: 5'- gCCGCGAcGCGCG-CccGUGCGUUgCgGCg -3' miRNA: 3'- -GGUGCU-CGCGCaGcuUAUGUAA-GgCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 30970 | 0.7 | 0.946525 |
Target: 5'- gCCGCGcGcCGCGUCGGAccgcgugcuUGCGcaCCGCu -3' miRNA: 3'- -GGUGCuC-GCGCAGCUU---------AUGUaaGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 31079 | 0.66 | 0.994295 |
Target: 5'- -uGCGuGCGCGUCGccgauGAUGCGUggauuagcgaagCUGCu -3' miRNA: 3'- ggUGCuCGCGCAGC-----UUAUGUAa-----------GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 31719 | 0.71 | 0.937045 |
Target: 5'- gCACGuuCGCGUCGuuucgcGUGCGUauagCCGCg -3' miRNA: 3'- gGUGCucGCGCAGCu-----UAUGUAa---GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 32802 | 0.68 | 0.981946 |
Target: 5'- aCACa---GCGUCGAAUACGUgcCCGUg -3' miRNA: 3'- gGUGcucgCGCAGCUUAUGUAa-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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