miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 23085 0.67 0.987411
Target:  5'- aCACG-GCGCGUU------GUUCCGCg -3'
miRNA:   3'- gGUGCuCGCGCAGcuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 39381 0.68 0.981946
Target:  5'- aCGCaAGUGUGUCGAuugACA--CCGCa -3'
miRNA:   3'- gGUGcUCGCGCAGCUua-UGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 20198 0.68 0.981946
Target:  5'- uCgGCGGGCgGCGUCGAuUGCGaaagCGCg -3'
miRNA:   3'- -GgUGCUCG-CGCAGCUuAUGUaag-GCG- -5'
22880 3' -50.4 NC_005137.2 + 34589 0.68 0.981737
Target:  5'- gCgGCGGGCGCGUCGccgcgcgGGUaGCggUCgGCg -3'
miRNA:   3'- -GgUGCUCGCGCAGC-------UUA-UGuaAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 42500 0.69 0.974865
Target:  5'- aCACG-GCGCuugcugcgCGGcgACAUUCCGUc -3'
miRNA:   3'- gGUGCuCGCGca------GCUuaUGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 110417 0.69 0.974865
Target:  5'- uCCACGuaCGCGUCGAcgGuCAUgUCGCg -3'
miRNA:   3'- -GGUGCucGCGCAGCUuaU-GUAaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 22847 0.69 0.974865
Target:  5'- -gGCGGGCGCG-CGcAUACcgacgCCGCc -3'
miRNA:   3'- ggUGCUCGCGCaGCuUAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 34707 0.69 0.962537
Target:  5'- gCGCGccGGCGUGUCGGcgaAUGCAcgcgUCCGa -3'
miRNA:   3'- gGUGC--UCGCGCAGCU---UAUGUa---AGGCg -5'
22880 3' -50.4 NC_005137.2 + 99334 0.67 0.991027
Target:  5'- aCCACGcGGCgGUGUCGuccgcuAUGCAcagcguggucgcgUCCGCg -3'
miRNA:   3'- -GGUGC-UCG-CGCAGCu-----UAUGUa------------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30747 0.67 0.991502
Target:  5'- gCCGCGAcGCGCG-CccGUGCGUUgCgGCg -3'
miRNA:   3'- -GGUGCU-CGCGCaGcuUAUGUAA-GgCG- -5'
22880 3' -50.4 NC_005137.2 + 33672 0.67 0.991502
Target:  5'- gCCugGAGCGCGUUGcgucuUugAg--CGCa -3'
miRNA:   3'- -GGugCUCGCGCAGCuu---AugUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 74282 0.66 0.996527
Target:  5'- uUCGCGcaugauaagaGGCGCGUUGAGU-CGUUCuugaucguuuuCGCg -3'
miRNA:   3'- -GGUGC----------UCGCGCAGCUUAuGUAAG-----------GCG- -5'
22880 3' -50.4 NC_005137.2 + 26454 0.66 0.996527
Target:  5'- -gACGAGUGCuuccgCGAcaACGUgggCCGCg -3'
miRNA:   3'- ggUGCUCGCGca---GCUuaUGUAa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 87189 0.66 0.995925
Target:  5'- uCgACGGGCGCGggCGGcUGCucgugCCGUc -3'
miRNA:   3'- -GgUGCUCGCGCa-GCUuAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 22266 0.66 0.995239
Target:  5'- -aACGAuGCGCGUCGuuug---UCUGCg -3'
miRNA:   3'- ggUGCU-CGCGCAGCuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108754 0.66 0.995239
Target:  5'- uUCGgGAGCGCGcUGcucaaAGUGCAcuUUCCGUg -3'
miRNA:   3'- -GGUgCUCGCGCaGC-----UUAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 43567 0.66 0.995239
Target:  5'- -uGCGGGCGCa-CGAAUGCGUaCUGg -3'
miRNA:   3'- ggUGCUCGCGcaGCUUAUGUAaGGCg -5'
22880 3' -50.4 NC_005137.2 + 7867 0.66 0.994784
Target:  5'- uCCACGAGCGUGcCGucacguaggaaaacGUGCAcaCCGg -3'
miRNA:   3'- -GGUGCUCGCGCaGCu-------------UAUGUaaGGCg -5'
22880 3' -50.4 NC_005137.2 + 31079 0.66 0.994295
Target:  5'- -uGCGuGCGCGUCGccgauGAUGCGUggauuagcgaagCUGCu -3'
miRNA:   3'- ggUGCuCGCGCAGC-----UUAUGUAa-----------GGCG- -5'
22880 3' -50.4 NC_005137.2 + 8415 0.67 0.991502
Target:  5'- uCCGCG-GCGUGUUucaggGCAUuaacgaUCCGCa -3'
miRNA:   3'- -GGUGCuCGCGCAGcuua-UGUA------AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.