miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 44370 0.67 0.943146
Target:  5'- -aGCgCGUCGcgGCAUuuuuucuucguaAAGgGCGUCGGGa -3'
miRNA:   3'- agCGgGCAGU--UGUG------------UUUgCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 45306 0.69 0.855919
Target:  5'- uUUGUCCGUgAugagcugacGCGCAAACGUGUCGa- -3'
miRNA:   3'- -AGCGGGCAgU---------UGUGUUUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 49731 0.66 0.959526
Target:  5'- uUCGUCCG-CuuCAUcgGCGCGUCGu- -3'
miRNA:   3'- -AGCGGGCaGuuGUGuuUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 56574 0.66 0.951802
Target:  5'- uUUGCgCCGUUAugGgAcccGACGCGaCGGGc -3'
miRNA:   3'- -AGCG-GGCAGUugUgU---UUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 60426 0.8 0.33224
Target:  5'- cCGCCCGcgCAGCACGAACGCaugauUUGGGa -3'
miRNA:   3'- aGCGGGCa-GUUGUGUUUGCGc----AGCCC- -5'
22882 3' -53.9 NC_005137.2 + 62250 0.68 0.905287
Target:  5'- gCGCCacacaagCGGCACcAACGCGUUGGu -3'
miRNA:   3'- aGCGGgca----GUUGUGuUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 65437 0.73 0.689741
Target:  5'- gUUGCCCGUguACACAuACGCGUUu-- -3'
miRNA:   3'- -AGCGGGCAguUGUGUuUGCGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 67322 1.11 0.00355
Target:  5'- aUCGCCCGUCAACACAAACGCGUCGGGu -3'
miRNA:   3'- -AGCGGGCAGUUGUGUUUGCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 67540 0.76 0.477969
Target:  5'- aCGCCgCGaggCGGCACAAACGCGcgccgagCGGGa -3'
miRNA:   3'- aGCGG-GCa--GUUGUGUUUGCGCa------GCCC- -5'
22882 3' -53.9 NC_005137.2 + 68381 0.72 0.709967
Target:  5'- ---aCCGUCAucUACGGACGCGUCGGc -3'
miRNA:   3'- agcgGGCAGUu-GUGUUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 68742 0.66 0.955779
Target:  5'- gUUG-CCGUCGAC-C-AACGCGUUGGu -3'
miRNA:   3'- -AGCgGGCAGUUGuGuUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 70109 0.69 0.863632
Target:  5'- cCGUuuGggCAAcCACGAGCGCGUCGa- -3'
miRNA:   3'- aGCGggCa-GUU-GUGUUUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 73437 0.69 0.885479
Target:  5'- gCGCUgGgcUCGACGCGuucuaAACGCGgCGGGg -3'
miRNA:   3'- aGCGGgC--AGUUGUGU-----UUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 74423 0.69 0.885479
Target:  5'- gUCGCCCGU---------CGCGUCGGGu -3'
miRNA:   3'- -AGCGGGCAguuguguuuGCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 74983 0.67 0.942689
Target:  5'- cUGCCCGUUgaAACAUuguucuGAACGUGUaaucgagCGGGg -3'
miRNA:   3'- aGCGGGCAG--UUGUG------UUUGCGCA-------GCCC- -5'
22882 3' -53.9 NC_005137.2 + 76581 0.66 0.955779
Target:  5'- aCGCCCGaUC-ACAUGcuCGUGUUGGa -3'
miRNA:   3'- aGCGGGC-AGuUGUGUuuGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 78636 0.72 0.723971
Target:  5'- -gGCCCGUCAugucggagaaaaacuGCACAAuaaGCG-CGGGc -3'
miRNA:   3'- agCGGGCAGU---------------UGUGUUug-CGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 84561 0.74 0.638482
Target:  5'- gUGCaacaCGUCGGCGCGuucgGGCGgGUCGGGc -3'
miRNA:   3'- aGCGg---GCAGUUGUGU----UUGCgCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 85681 0.69 0.885479
Target:  5'- gUUGUagaCGUCGACACGuuuGCGCGUCa-- -3'
miRNA:   3'- -AGCGg--GCAGUUGUGUu--UGCGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 87103 0.68 0.905287
Target:  5'- gCGgCCGUUAACaacggccaACAAGCGCcUUGGGu -3'
miRNA:   3'- aGCgGGCAGUUG--------UGUUUGCGcAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.