miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 948 0.72 0.729926
Target:  5'- gCGCCCGUCAucgGCGCAauAAgGCG-CGGc -3'
miRNA:   3'- aGCGGGCAGU---UGUGU--UUgCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 1505 0.68 0.917311
Target:  5'- cCGCCgCG-CGGCGCcGACGCGUUGu- -3'
miRNA:   3'- aGCGG-GCaGUUGUGuUUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 6847 0.66 0.959526
Target:  5'- gCGUCCGUguuGCuauCGAACGUGUCgcuGGGg -3'
miRNA:   3'- aGCGGGCAgu-UGu--GUUUGCGCAG---CCC- -5'
22882 3' -53.9 NC_005137.2 + 9190 0.69 0.885479
Target:  5'- gUUGCCCGUUacaguugugAugGCAAACGCGaUGGc -3'
miRNA:   3'- -AGCGGGCAG---------UugUGUUUGCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 10720 0.67 0.922962
Target:  5'- gUGCaCCG-CAuCGCGcACGCGUCGGc -3'
miRNA:   3'- aGCG-GGCaGUuGUGUuUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 13428 0.69 0.885479
Target:  5'- gUCGCCCGUCAGcCGCAccggcGGCGCacuuuGcCGGu -3'
miRNA:   3'- -AGCGGGCAGUU-GUGU-----UUGCG-----CaGCCc -5'
22882 3' -53.9 NC_005137.2 + 18268 0.67 0.922962
Target:  5'- gCGUCCGUUAACACGGACaCGUUu-- -3'
miRNA:   3'- aGCGGGCAGUUGUGUUUGcGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 20274 0.68 0.917311
Target:  5'- aUCGCCCGgc-GCACAAGCGC-UCu-- -3'
miRNA:   3'- -AGCGGGCaguUGUGUUUGCGcAGccc -5'
22882 3' -53.9 NC_005137.2 + 20351 0.8 0.324752
Target:  5'- aCGCCCGUCAcggGCACAAgccaaACGCcGUCGGc -3'
miRNA:   3'- aGCGGGCAGU---UGUGUU-----UGCG-CAGCCc -5'
22882 3' -53.9 NC_005137.2 + 27486 0.66 0.966353
Target:  5'- cCGCCaGUCAAUGCuagaAAAUGCGUUgcaGGGu -3'
miRNA:   3'- aGCGGgCAGUUGUG----UUUGCGCAG---CCC- -5'
22882 3' -53.9 NC_005137.2 + 27911 0.66 0.955779
Target:  5'- aUCGCCCGgCAAC-CAAuuGCGCacgCGGu -3'
miRNA:   3'- -AGCGGGCaGUUGuGUU--UGCGca-GCCc -5'
22882 3' -53.9 NC_005137.2 + 31010 0.69 0.878417
Target:  5'- aCGCUgGUCGGCGCcgcuaCGUCGGGc -3'
miRNA:   3'- aGCGGgCAGUUGUGuuugcGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 31704 0.67 0.933537
Target:  5'- gUCGCaccgaCGUguGCACGuuCGCGUCGu- -3'
miRNA:   3'- -AGCGg----GCAguUGUGUuuGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 32634 0.66 0.960962
Target:  5'- -aGCCCGUCgcgAcggcgccaaaccggcGCACAAGCGUGaCGGu -3'
miRNA:   3'- agCGGGCAG---U---------------UGUGUUUGCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 34517 0.71 0.748571
Target:  5'- gCGCCCGUgGACACG-ACGCGcaccguguugcguUCGcGGu -3'
miRNA:   3'- aGCGGGCAgUUGUGUuUGCGC-------------AGC-CC- -5'
22882 3' -53.9 NC_005137.2 + 35360 0.77 0.440745
Target:  5'- cUUGCCCGUCGGCGCAcGGCGCacgCGGa -3'
miRNA:   3'- -AGCGGGCAGUUGUGU-UUGCGca-GCCc -5'
22882 3' -53.9 NC_005137.2 + 35650 0.69 0.863632
Target:  5'- aCGCCCGUacugggauuGCACGAacguGCGCGUuCGcGGu -3'
miRNA:   3'- aGCGGGCAgu-------UGUGUU----UGCGCA-GC-CC- -5'
22882 3' -53.9 NC_005137.2 + 37560 0.72 0.729926
Target:  5'- gUGCCCGUauGCAucccCGAACGCauGUCGGGu -3'
miRNA:   3'- aGCGGGCAguUGU----GUUUGCG--CAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 37672 0.69 0.885479
Target:  5'- gUCGCCgGUCAGCACGAugcuaGCGC-UCa-- -3'
miRNA:   3'- -AGCGGgCAGUUGUGUU-----UGCGcAGccc -5'
22882 3' -53.9 NC_005137.2 + 43832 0.68 0.915568
Target:  5'- gCGCCCGUCgAACGCGAuuugcacgugcgaaACGcCG-CGGa -3'
miRNA:   3'- aGCGGGCAG-UUGUGUU--------------UGC-GCaGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.