miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 18268 0.67 0.922962
Target:  5'- gCGUCCGUUAACACGGACaCGUUu-- -3'
miRNA:   3'- aGCGGGCAGUUGUGUUUGcGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 37672 0.69 0.885479
Target:  5'- gUCGCCgGUCAGCACGAugcuaGCGC-UCa-- -3'
miRNA:   3'- -AGCGGgCAGUUGUGUU-----UGCGcAGccc -5'
22882 3' -53.9 NC_005137.2 + 85681 0.69 0.885479
Target:  5'- gUUGUagaCGUCGACACGuuuGCGCGUCa-- -3'
miRNA:   3'- -AGCGg--GCAGUUGUGUu--UGCGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 87103 0.68 0.905287
Target:  5'- gCGgCCGUUAACaacggccaACAAGCGCcUUGGGu -3'
miRNA:   3'- aGCgGGCAGUUG--------UGUUUGCGcAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 93427 0.68 0.911419
Target:  5'- gCGCCUGUacaAACcCGAcAUGCGuUCGGGg -3'
miRNA:   3'- aGCGGGCAg--UUGuGUU-UGCGC-AGCCC- -5'
22882 3' -53.9 NC_005137.2 + 117837 0.68 0.911419
Target:  5'- cCGCCacCGgggcaaccacCAGCACGGACGCGUCcGGc -3'
miRNA:   3'- aGCGG--GCa---------GUUGUGUUUGCGCAGcCC- -5'
22882 3' -53.9 NC_005137.2 + 43832 0.68 0.915568
Target:  5'- gCGCCCGUCgAACGCGAuuugcacgugcgaaACGcCG-CGGa -3'
miRNA:   3'- aGCGGGCAG-UUGUGUU--------------UGC-GCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 99871 0.68 0.916732
Target:  5'- cUGUCCGUCAaacucguACACcGACGCaUCGGu -3'
miRNA:   3'- aGCGGGCAGU-------UGUGuUUGCGcAGCCc -5'
22882 3' -53.9 NC_005137.2 + 1505 0.68 0.917311
Target:  5'- cCGCCgCG-CGGCGCcGACGCGUUGu- -3'
miRNA:   3'- aGCGG-GCaGUUGUGuUUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 9190 0.69 0.885479
Target:  5'- gUUGCCCGUUacaguugugAugGCAAACGCGaUGGc -3'
miRNA:   3'- -AGCGGGCAG---------UugUGUUUGCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 31010 0.69 0.878417
Target:  5'- aCGCUgGUCGGCGCcgcuaCGUCGGGc -3'
miRNA:   3'- aGCGGgCAGUUGUGuuugcGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 100254 0.69 0.871133
Target:  5'- -gGCgCCG-CAACGCAcgggcGCGCGUCGcGGc -3'
miRNA:   3'- agCG-GGCaGUUGUGUu----UGCGCAGC-CC- -5'
22882 3' -53.9 NC_005137.2 + 84561 0.74 0.638482
Target:  5'- gUGCaacaCGUCGGCGCGuucgGGCGgGUCGGGc -3'
miRNA:   3'- aGCGg---GCAGUUGUGU----UUGCgCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 90857 0.73 0.679551
Target:  5'- cUCGCCCGUCAucaGC-AACGUGuuuuuguucUCGGGc -3'
miRNA:   3'- -AGCGGGCAGUug-UGuUUGCGC---------AGCCC- -5'
22882 3' -53.9 NC_005137.2 + 68381 0.72 0.709967
Target:  5'- ---aCCGUCAucUACGGACGCGUCGGc -3'
miRNA:   3'- agcgGGCAGUu-GUGUUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 93508 0.72 0.719985
Target:  5'- gUCGUagCCGaCGGCGCAAaugcACGCGUCGGc -3'
miRNA:   3'- -AGCG--GGCaGUUGUGUU----UGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 948 0.72 0.729926
Target:  5'- gCGCCCGUCAucgGCGCAauAAgGCG-CGGc -3'
miRNA:   3'- aGCGGGCAGU---UGUGU--UUgCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 88128 0.69 0.855919
Target:  5'- aCGCCC-UCAACGgAcACGCGaUCGGc -3'
miRNA:   3'- aGCGGGcAGUUGUgUuUGCGC-AGCCc -5'
22882 3' -53.9 NC_005137.2 + 100147 0.69 0.855919
Target:  5'- cUCGCCCacg--UACGGGCGCGcCGGGu -3'
miRNA:   3'- -AGCGGGcaguuGUGUUUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 109007 0.69 0.863632
Target:  5'- aCGCUgGUCAuCGCGAuaACGCGcgUGGGu -3'
miRNA:   3'- aGCGGgCAGUuGUGUU--UGCGCa-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.