miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 118937 0.69 0.636874
Target:  5'- cGGUcgGCGACGUGAuUGC-CGACCGacuggCGUa -3'
miRNA:   3'- -CCG--CGCUGCGCU-ACGcGCUGGCa----GCG- -5'
22882 5' -59.1 NC_005137.2 + 117943 0.69 0.636874
Target:  5'- gGGCGCGuuucgcaaACGCGGUGuCGUGuccgacgaaaccACCGUCa- -3'
miRNA:   3'- -CCGCGC--------UGCGCUAC-GCGC------------UGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 93559 0.69 0.636874
Target:  5'- aGCGCaaauACGUGGUGCGCGGCgGcaaucaCGCu -3'
miRNA:   3'- cCGCGc---UGCGCUACGCGCUGgCa-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 42668 0.69 0.636874
Target:  5'- uGGCGCGACGCcaaGCGCGcaAUCGaCGg -3'
miRNA:   3'- -CCGCGCUGCGcuaCGCGC--UGGCaGCg -5'
22882 5' -59.1 NC_005137.2 + 72321 0.69 0.626945
Target:  5'- cGGCGCcacuguccgaACGCGAauUGCGCGAgCUG-CGCc -3'
miRNA:   3'- -CCGCGc---------UGCGCU--ACGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 68446 0.69 0.626945
Target:  5'- cGGCGCagcccaugaGGCaGUGGUuCGuCGACCGUUGCg -3'
miRNA:   3'- -CCGCG---------CUG-CGCUAcGC-GCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 106592 0.69 0.606114
Target:  5'- cGGCGCcGCGguguugaCGAUGCGUaGcCCGUCGUu -3'
miRNA:   3'- -CCGCGcUGC-------GCUACGCG-CuGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 81311 0.69 0.605124
Target:  5'- cGGCcaaGCGGCGCGuaguuaccgccGCGCGccAUUGUCGCg -3'
miRNA:   3'- -CCG---CGCUGCGCua---------CGCGC--UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 63927 0.7 0.587335
Target:  5'- cGGUuCGcACGCGGUGCGCGAauGUCcCg -3'
miRNA:   3'- -CCGcGC-UGCGCUACGCGCUggCAGcG- -5'
22882 5' -59.1 NC_005137.2 + 52061 0.7 0.587335
Target:  5'- uGCGCauGACGCGAaaCGCG-UUGUCGCa -3'
miRNA:   3'- cCGCG--CUGCGCUacGCGCuGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 79582 0.7 0.577493
Target:  5'- uGCGCGcCGCcGUGCGauAgCGUCGCa -3'
miRNA:   3'- cCGCGCuGCGcUACGCgcUgGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 37489 0.7 0.567687
Target:  5'- cGGC-CGACGCG-UGCauuuGCG-CCGUCGg -3'
miRNA:   3'- -CCGcGCUGCGCuACG----CGCuGGCAGCg -5'
22882 5' -59.1 NC_005137.2 + 103802 0.7 0.567687
Target:  5'- cGGuCGCGACuCuAUGUGCGACCGUUu- -3'
miRNA:   3'- -CC-GCGCUGcGcUACGCGCUGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 139 0.7 0.557924
Target:  5'- cGGCGUacaauucaGGCGCGGgcUGCGCGuCCaaCGCg -3'
miRNA:   3'- -CCGCG--------CUGCGCU--ACGCGCuGGcaGCG- -5'
22882 5' -59.1 NC_005137.2 + 85895 0.7 0.538548
Target:  5'- uGUGCGACGCGucGCGCGcCCG-CGa -3'
miRNA:   3'- cCGCGCUGCGCuaCGCGCuGGCaGCg -5'
22882 5' -59.1 NC_005137.2 + 69272 0.71 0.519408
Target:  5'- cGGCGUG-CGCGGU-CGCGGCgCGUUuagGCg -3'
miRNA:   3'- -CCGCGCuGCGCUAcGCGCUG-GCAG---CG- -5'
22882 5' -59.1 NC_005137.2 + 101150 0.71 0.519408
Target:  5'- aGCGCGGCGuUGAgaagcGCGCGACCcuuuuuuagCGCg -3'
miRNA:   3'- cCGCGCUGC-GCUa----CGCGCUGGca-------GCG- -5'
22882 5' -59.1 NC_005137.2 + 31803 0.71 0.519408
Target:  5'- uGGCGCa--GCGAUGCgGCGGCCcaauGcCGCg -3'
miRNA:   3'- -CCGCGcugCGCUACG-CGCUGG----CaGCG- -5'
22882 5' -59.1 NC_005137.2 + 34867 0.71 0.491222
Target:  5'- cGGCGgGcaACGCGAUGCGCaugggcguACCGUaCGUu -3'
miRNA:   3'- -CCGCgC--UGCGCUACGCGc-------UGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 31469 0.71 0.490295
Target:  5'- aGCGCGcugacgcaguuaaACGCGGaaaacuUGCGCGGCCaGcCGCa -3'
miRNA:   3'- cCGCGC-------------UGCGCU------ACGCGCUGG-CaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.