Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22882 | 5' | -59.1 | NC_005137.2 | + | 45091 | 0.8 | 0.163562 |
Target: 5'- cGCGCGAcuugcucugccacuCGCGGgcGCGCGACgCGUCGCa -3' miRNA: 3'- cCGCGCU--------------GCGCUa-CGCGCUG-GCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 28050 | 0.76 | 0.253154 |
Target: 5'- uGGCGCGACGCgcgcuggGAUGCGCcagacGGCUGUacaCGCa -3' miRNA: 3'- -CCGCGCUGCG-------CUACGCG-----CUGGCA---GCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 110432 | 0.76 | 0.265759 |
Target: 5'- gGGCGCGACgGUGAgcgUGCacaccGCGGCCGgCGCg -3' miRNA: 3'- -CCGCGCUG-CGCU---ACG-----CGCUGGCaGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 100040 | 0.74 | 0.33278 |
Target: 5'- cGGUcCGACGCGgcGCGCGGCgCGUUcaGCa -3' miRNA: 3'- -CCGcGCUGCGCuaCGCGCUG-GCAG--CG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 17300 | 0.74 | 0.362861 |
Target: 5'- uGCGCaggacauuGACGCGcUGUGCGACgugcgCGUCGCa -3' miRNA: 3'- cCGCG--------CUGCGCuACGCGCUG-----GCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 95896 | 0.73 | 0.386629 |
Target: 5'- uGGUGCGuCGCGGUGaC-CGuACCGUUGCc -3' miRNA: 3'- -CCGCGCuGCGCUAC-GcGC-UGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 108154 | 0.72 | 0.428452 |
Target: 5'- cGGCgGCGGCGuCGGUaugcGCGCGcCCGcccUCGCg -3' miRNA: 3'- -CCG-CGCUGC-GCUA----CGCGCuGGC---AGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 34867 | 0.71 | 0.491222 |
Target: 5'- cGGCGgGcaACGCGAUGCGCaugggcguACCGUaCGUu -3' miRNA: 3'- -CCGCgC--UGCGCUACGCGc-------UGGCA-GCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 31803 | 0.71 | 0.519408 |
Target: 5'- uGGCGCa--GCGAUGCgGCGGCCcaauGcCGCg -3' miRNA: 3'- -CCGCGcugCGCUACG-CGCUGG----CaGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 69272 | 0.71 | 0.519408 |
Target: 5'- cGGCGUG-CGCGGU-CGCGGCgCGUUuagGCg -3' miRNA: 3'- -CCGCGCuGCGCUAcGCGCUG-GCAG---CG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 42668 | 0.69 | 0.636874 |
Target: 5'- uGGCGCGACGCcaaGCGCGcaAUCGaCGg -3' miRNA: 3'- -CCGCGCUGCGcuaCGCGC--UGGCaGCg -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 72321 | 0.69 | 0.626945 |
Target: 5'- cGGCGCcacuguccgaACGCGAauUGCGCGAgCUG-CGCc -3' miRNA: 3'- -CCGCGc---------UGCGCU--ACGCGCU-GGCaGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 68446 | 0.69 | 0.626945 |
Target: 5'- cGGCGCagcccaugaGGCaGUGGUuCGuCGACCGUUGCg -3' miRNA: 3'- -CCGCG---------CUG-CGCUAcGC-GCUGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 106592 | 0.69 | 0.606114 |
Target: 5'- cGGCGCcGCGguguugaCGAUGCGUaGcCCGUCGUu -3' miRNA: 3'- -CCGCGcUGC-------GCUACGCG-CuGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 63927 | 0.7 | 0.587335 |
Target: 5'- cGGUuCGcACGCGGUGCGCGAauGUCcCg -3' miRNA: 3'- -CCGcGC-UGCGCUACGCGCUggCAGcG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 52061 | 0.7 | 0.587335 |
Target: 5'- uGCGCauGACGCGAaaCGCG-UUGUCGCa -3' miRNA: 3'- cCGCG--CUGCGCUacGCGCuGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 79582 | 0.7 | 0.577493 |
Target: 5'- uGCGCGcCGCcGUGCGauAgCGUCGCa -3' miRNA: 3'- cCGCGCuGCGcUACGCgcUgGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 67361 | 1.12 | 0.001038 |
Target: 5'- gGGCGCGACGCGAUGCGCGACCGUCGCc -3' miRNA: 3'- -CCGCGCUGCGCUACGCGCUGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 63463 | 0.66 | 0.798673 |
Target: 5'- cGGCGCG-CGUu-UGUGCcGCC-UCGCg -3' miRNA: 3'- -CCGCGCuGCGcuACGCGcUGGcAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 20376 | 0.66 | 0.789894 |
Target: 5'- cGcCGuCGGCGCGuuuGUGCaCGGCCGUCa- -3' miRNA: 3'- cC-GC-GCUGCGC---UACGcGCUGGCAGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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