miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 97992 0.68 0.666611
Target:  5'- cGCGCGGCGUGG-GUGCGcCCGcCa- -3'
miRNA:   3'- cCGCGCUGCGCUaCGCGCuGGCaGcg -5'
22882 5' -59.1 NC_005137.2 + 63927 0.7 0.587335
Target:  5'- cGGUuCGcACGCGGUGCGCGAauGUCcCg -3'
miRNA:   3'- -CCGcGC-UGCGCUACGCGCUggCAGcG- -5'
22882 5' -59.1 NC_005137.2 + 106592 0.69 0.606114
Target:  5'- cGGCGCcGCGguguugaCGAUGCGUaGcCCGUCGUu -3'
miRNA:   3'- -CCGCGcUGC-------GCUACGCG-CuGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 68446 0.69 0.626945
Target:  5'- cGGCGCagcccaugaGGCaGUGGUuCGuCGACCGUUGCg -3'
miRNA:   3'- -CCGCG---------CUG-CGCUAcGC-GCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 72321 0.69 0.626945
Target:  5'- cGGCGCcacuguccgaACGCGAauUGCGCGAgCUG-CGCc -3'
miRNA:   3'- -CCGCGc---------UGCGCU--ACGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 42668 0.69 0.636874
Target:  5'- uGGCGCGACGCcaaGCGCGcaAUCGaCGg -3'
miRNA:   3'- -CCGCGCUGCGcuaCGCGC--UGGCaGCg -5'
22882 5' -59.1 NC_005137.2 + 112453 0.69 0.6468
Target:  5'- uGGaCGCGGCGgcagGAUGgGCGACgG-CGCc -3'
miRNA:   3'- -CC-GCGCUGCg---CUACgCGCUGgCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 16593 0.68 0.656714
Target:  5'- uGUGCG-CGCauuGAUGCGCGGCgGcucgacuaaUCGCg -3'
miRNA:   3'- cCGCGCuGCG---CUACGCGCUGgC---------AGCG- -5'
22882 5' -59.1 NC_005137.2 + 125032 0.68 0.660675
Target:  5'- cGGCGUGGCGCaggcaacggagccggGcgGCGCGgcGCCGgaucugaacggCGCa -3'
miRNA:   3'- -CCGCGCUGCG---------------CuaCGCGC--UGGCa----------GCG- -5'
22882 5' -59.1 NC_005137.2 + 52061 0.7 0.587335
Target:  5'- uGCGCauGACGCGAaaCGCG-UUGUCGCa -3'
miRNA:   3'- cCGCG--CUGCGCUacGCGCuGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 79582 0.7 0.577493
Target:  5'- uGCGCGcCGCcGUGCGauAgCGUCGCa -3'
miRNA:   3'- cCGCGCuGCGcUACGCgcUgGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 69272 0.71 0.519408
Target:  5'- cGGCGUG-CGCGGU-CGCGGCgCGUUuagGCg -3'
miRNA:   3'- -CCGCGCuGCGCUAcGCGCUG-GCAG---CG- -5'
22882 5' -59.1 NC_005137.2 + 28050 0.76 0.253154
Target:  5'- uGGCGCGACGCgcgcuggGAUGCGCcagacGGCUGUacaCGCa -3'
miRNA:   3'- -CCGCGCUGCG-------CUACGCG-----CUGGCA---GCG- -5'
22882 5' -59.1 NC_005137.2 + 110432 0.76 0.265759
Target:  5'- gGGCGCGACgGUGAgcgUGCacaccGCGGCCGgCGCg -3'
miRNA:   3'- -CCGCGCUG-CGCU---ACG-----CGCUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 100040 0.74 0.33278
Target:  5'- cGGUcCGACGCGgcGCGCGGCgCGUUcaGCa -3'
miRNA:   3'- -CCGcGCUGCGCuaCGCGCUG-GCAG--CG- -5'
22882 5' -59.1 NC_005137.2 + 17300 0.74 0.362861
Target:  5'- uGCGCaggacauuGACGCGcUGUGCGACgugcgCGUCGCa -3'
miRNA:   3'- cCGCG--------CUGCGCuACGCGCUG-----GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 95896 0.73 0.386629
Target:  5'- uGGUGCGuCGCGGUGaC-CGuACCGUUGCc -3'
miRNA:   3'- -CCGCGCuGCGCUAC-GcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 108154 0.72 0.428452
Target:  5'- cGGCgGCGGCGuCGGUaugcGCGCGcCCGcccUCGCg -3'
miRNA:   3'- -CCG-CGCUGC-GCUA----CGCGCuGGC---AGCG- -5'
22882 5' -59.1 NC_005137.2 + 34867 0.71 0.491222
Target:  5'- cGGCGgGcaACGCGAUGCGCaugggcguACCGUaCGUu -3'
miRNA:   3'- -CCGCgC--UGCGCUACGCGc-------UGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 31803 0.71 0.519408
Target:  5'- uGGCGCa--GCGAUGCgGCGGCCcaauGcCGCg -3'
miRNA:   3'- -CCGCGcugCGCUACG-CGCUGG----CaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.