miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 139 0.7 0.557924
Target:  5'- cGGCGUacaauucaGGCGCGGgcUGCGCGuCCaaCGCg -3'
miRNA:   3'- -CCGCG--------CUGCGCU--ACGCGCuGGcaGCG- -5'
22882 5' -59.1 NC_005137.2 + 5871 0.66 0.78098
Target:  5'- cGGUGCauugucaaGACGUucGAgcgGCGCGGcCCGcCGCu -3'
miRNA:   3'- -CCGCG--------CUGCG--CUa--CGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 11299 0.73 0.400545
Target:  5'- uGCGCGGCGgGAUGCGUacgugcuaagcuguGugCG-CGCg -3'
miRNA:   3'- cCGCGCUGCgCUACGCG--------------CugGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 11428 0.67 0.75352
Target:  5'- aGUGUGGCaCG-UGCucaGCGugCGUCGCu -3'
miRNA:   3'- cCGCGCUGcGCuACG---CGCugGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 12881 0.67 0.75352
Target:  5'- gGGCGCGGgGCGAaacagGUGGCCGaacacgagCGCa -3'
miRNA:   3'- -CCGCGCUgCGCUacg--CGCUGGCa-------GCG- -5'
22882 5' -59.1 NC_005137.2 + 12959 0.66 0.78098
Target:  5'- cGGCGCGGCcacaaaCGGUugGCaCGcAUCGUCGCa -3'
miRNA:   3'- -CCGCGCUGc-----GCUA--CGcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 13628 0.66 0.78098
Target:  5'- aGGCG-GACGUGaAUGgGUGAUUGaCGCc -3'
miRNA:   3'- -CCGCgCUGCGC-UACgCGCUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 16593 0.68 0.656714
Target:  5'- uGUGCG-CGCauuGAUGCGCGGCgGcucgacuaaUCGCg -3'
miRNA:   3'- cCGCGCuGCG---CUACGCGCUGgC---------AGCG- -5'
22882 5' -59.1 NC_005137.2 + 17300 0.74 0.362861
Target:  5'- uGCGCaggacauuGACGCGcUGUGCGACgugcgCGUCGCa -3'
miRNA:   3'- cCGCG--------CUGCGCuACGCGCUG-----GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 17474 0.66 0.789894
Target:  5'- gGGUGUGGgGCuGGUggugGUGCaGCCGUUGCa -3'
miRNA:   3'- -CCGCGCUgCG-CUA----CGCGcUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 18609 0.73 0.411401
Target:  5'- uGGCGCG-C-CG-UGCGCGAUCG-CGCa -3'
miRNA:   3'- -CCGCGCuGcGCuACGCGCUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 20280 0.75 0.291169
Target:  5'- cGGCGCacaaGCGCucUGCGCGcacACCGUUGCg -3'
miRNA:   3'- -CCGCGc---UGCGcuACGCGC---UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 20376 0.66 0.789894
Target:  5'- cGcCGuCGGCGCGuuuGUGCaCGGCCGUCa- -3'
miRNA:   3'- cC-GC-GCUGCGC---UACGcGCUGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 20563 0.76 0.271939
Target:  5'- cGCGcCGGcCGCGGUGUGCacgcucACCGUCGCg -3'
miRNA:   3'- cCGC-GCU-GCGCUACGCGc-----UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 22827 0.68 0.704881
Target:  5'- uGCGCGuugccaaACGCGAgggcggGCGCGcgcauaccgacGCCGcCGCc -3'
miRNA:   3'- cCGCGC-------UGCGCUa-----CGCGC-----------UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 22886 0.74 0.347588
Target:  5'- -cCGgGAUGCGGUGCuGCGAUCGgcgCGCa -3'
miRNA:   3'- ccGCgCUGCGCUACG-CGCUGGCa--GCG- -5'
22882 5' -59.1 NC_005137.2 + 23030 0.76 0.271939
Target:  5'- uGCGCG-CGCGucaaCGCGACCGaUCGCg -3'
miRNA:   3'- cCGCGCuGCGCuac-GCGCUGGC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 24319 0.67 0.715537
Target:  5'- cGGUG-GugGCGG-GCaCGGCCGUUGUc -3'
miRNA:   3'- -CCGCgCugCGCUaCGcGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 28050 0.76 0.253154
Target:  5'- uGGCGCGACGCgcgcuggGAUGCGCcagacGGCUGUacaCGCa -3'
miRNA:   3'- -CCGCGCUGCG-------CUACGCG-----CUGGCA---GCG- -5'
22882 5' -59.1 NC_005137.2 + 30737 0.75 0.325552
Target:  5'- gGGCGUGAaugcCGCGAcGCGCGcCCGUgCGUu -3'
miRNA:   3'- -CCGCGCU----GCGCUaCGCGCuGGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.