miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 67361 1.12 0.001038
Target:  5'- gGGCGCGACGCGAUGCGCGACCGUCGCc -3'
miRNA:   3'- -CCGCGCUGCGCUACGCGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 45091 0.8 0.163562
Target:  5'- cGCGCGAcuugcucugccacuCGCGGgcGCGCGACgCGUCGCa -3'
miRNA:   3'- cCGCGCU--------------GCGCUa-CGCGCUG-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 31038 0.79 0.17693
Target:  5'- uGGCGCacgaagaGGCGCGcgGcCGCGGCCGUUGUc -3'
miRNA:   3'- -CCGCG-------CUGCGCuaC-GCGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 28050 0.76 0.253154
Target:  5'- uGGCGCGACGCgcgcuggGAUGCGCcagacGGCUGUacaCGCa -3'
miRNA:   3'- -CCGCGCUGCG-------CUACGCG-----CUGGCA---GCG- -5'
22882 5' -59.1 NC_005137.2 + 110432 0.76 0.265759
Target:  5'- gGGCGCGACgGUGAgcgUGCacaccGCGGCCGgCGCg -3'
miRNA:   3'- -CCGCGCUG-CGCU---ACG-----CGCUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 20563 0.76 0.271939
Target:  5'- cGCGcCGGcCGCGGUGUGCacgcucACCGUCGCg -3'
miRNA:   3'- cCGC-GCU-GCGCUACGCGc-----UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 23030 0.76 0.271939
Target:  5'- uGCGCG-CGCGucaaCGCGACCGaUCGCg -3'
miRNA:   3'- cCGCGCuGCGCuac-GCGCUGGC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 20280 0.75 0.291169
Target:  5'- cGGCGCacaaGCGCucUGCGCGcacACCGUUGCg -3'
miRNA:   3'- -CCGCGc---UGCGcuACGCGC---UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 87194 0.75 0.311447
Target:  5'- gGGCGCGG-GCGGcUGCuCGuGCCGUCGCu -3'
miRNA:   3'- -CCGCGCUgCGCU-ACGcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 30737 0.75 0.325552
Target:  5'- gGGCGUGAaugcCGCGAcGCGCGcCCGUgCGUu -3'
miRNA:   3'- -CCGCGCU----GCGCUaCGCGCuGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 100040 0.74 0.33278
Target:  5'- cGGUcCGACGCGgcGCGCGGCgCGUUcaGCa -3'
miRNA:   3'- -CCGcGCUGCGCuaCGCGCUG-GCAG--CG- -5'
22882 5' -59.1 NC_005137.2 + 22886 0.74 0.347588
Target:  5'- -cCGgGAUGCGGUGCuGCGAUCGgcgCGCa -3'
miRNA:   3'- ccGCgCUGCGCUACG-CGCUGGCa--GCG- -5'
22882 5' -59.1 NC_005137.2 + 108541 0.74 0.362861
Target:  5'- cGGCGUGAgCGCGGUGCaGCcGACgGagCGCa -3'
miRNA:   3'- -CCGCGCU-GCGCUACG-CG-CUGgCa-GCG- -5'
22882 5' -59.1 NC_005137.2 + 84891 0.74 0.362861
Target:  5'- uGGgGUGACGCGugguccacgcucGUGCGUGuuGCaCGUCGCg -3'
miRNA:   3'- -CCgCGCUGCGC------------UACGCGC--UG-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 17300 0.74 0.362861
Target:  5'- uGCGCaggacauuGACGCGcUGUGCGACgugcgCGUCGCa -3'
miRNA:   3'- cCGCG--------CUGCGCuACGCGCUG-----GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 95896 0.73 0.386629
Target:  5'- uGGUGCGuCGCGGUGaC-CGuACCGUUGCc -3'
miRNA:   3'- -CCGCGCuGCGCUAC-GcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 11299 0.73 0.400545
Target:  5'- uGCGCGGCGgGAUGCGUacgugcuaagcuguGugCG-CGCg -3'
miRNA:   3'- cCGCGCUGCgCUACGCG--------------CugGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 51690 0.73 0.403034
Target:  5'- -cCGUaGACGUGAUGCGCGGCuCGuUUGCa -3'
miRNA:   3'- ccGCG-CUGCGCUACGCGCUG-GC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 123989 0.73 0.406368
Target:  5'- aGGcCGUGACGCGcGUGCGCcacguugugcccggcGACCGcUCGUc -3'
miRNA:   3'- -CC-GCGCUGCGC-UACGCG---------------CUGGC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 18609 0.73 0.411401
Target:  5'- uGGCGCG-C-CG-UGCGCGAUCG-CGCa -3'
miRNA:   3'- -CCGCGCuGcGCuACGCGCUGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.