miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 3' -56.4 NC_005137.2 + 73814 0.66 0.855291
Target:  5'- gUUGGCCaaaaacgCGUCGCGGUcacaaagGUCGgccauAACGUGUc -3'
miRNA:   3'- -AACCGG-------GUAGCGCCG-------CAGU-----UUGCACA- -5'
22883 3' -56.4 NC_005137.2 + 28509 0.66 0.832296
Target:  5'- gUGGCCCAacuugacgCGCguuucGGCGUUgauGACGUGa -3'
miRNA:   3'- aACCGGGUa-------GCG-----CCGCAGu--UUGCACa -5'
22883 3' -56.4 NC_005137.2 + 109441 0.66 0.823716
Target:  5'- -cGGCCCAUcggucacccaaCGCGGCGUUu--CGUc- -3'
miRNA:   3'- aaCCGGGUA-----------GCGCCGCAGuuuGCAca -5'
22883 3' -56.4 NC_005137.2 + 32634 0.67 0.794166
Target:  5'- --aGCCCGUCGCgacggcgccaaaccGGCGcaCAAGCGUGa -3'
miRNA:   3'- aacCGGGUAGCG--------------CCGCa-GUUUGCACa -5'
22883 3' -56.4 NC_005137.2 + 13995 0.67 0.787674
Target:  5'- aUUGGCCCGaCGUGGa-UCgGGACGUGUu -3'
miRNA:   3'- -AACCGGGUaGCGCCgcAG-UUUGCACA- -5'
22883 3' -56.4 NC_005137.2 + 81675 0.67 0.778278
Target:  5'- aUGGCCgaAUCGCugccGGUGUCGGGCGg-- -3'
miRNA:   3'- aACCGGg-UAGCG----CCGCAGUUUGCaca -5'
22883 3' -56.4 NC_005137.2 + 63003 0.68 0.72945
Target:  5'- -cGGaCCCAUggUGCGGCG-CcGGCGUGUc -3'
miRNA:   3'- aaCC-GGGUA--GCGCCGCaGuUUGCACA- -5'
22883 3' -56.4 NC_005137.2 + 44828 0.68 0.70924
Target:  5'- -cGGCCgCcUUGuCGGCGUCAAACGa-- -3'
miRNA:   3'- aaCCGG-GuAGC-GCCGCAGUUUGCaca -5'
22883 3' -56.4 NC_005137.2 + 10690 0.69 0.657691
Target:  5'- uUUGGCCaccguuUCGUGGCGuUCGAugGCGUGc -3'
miRNA:   3'- -AACCGGgu----AGCGCCGC-AGUU--UGCACa -5'
22883 3' -56.4 NC_005137.2 + 51701 0.7 0.647282
Target:  5'- -cGGCaCCGUUGCGcGCGUCGGaagcgcauguACGUGc -3'
miRNA:   3'- aaCCG-GGUAGCGC-CGCAGUU----------UGCACa -5'
22883 3' -56.4 NC_005137.2 + 40257 0.71 0.564245
Target:  5'- aUUGGCCg--UGUGGCGcgCAAACGUGUu -3'
miRNA:   3'- -AACCGGguaGCGCCGCa-GUUUGCACA- -5'
22883 3' -56.4 NC_005137.2 + 34642 0.72 0.503799
Target:  5'- gUUGGcCCCGUCGCGGCG-UAAGCa--- -3'
miRNA:   3'- -AACC-GGGUAGCGCCGCaGUUUGcaca -5'
22883 3' -56.4 NC_005137.2 + 67042 1.06 0.0033
Target:  5'- aUUGGCCCAUCGCGGCGUCAAACGUGUa -3'
miRNA:   3'- -AACCGGGUAGCGCCGCAGUUUGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.