Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 125033 | 0.69 | 0.809387 |
Target: 5'- gGCGUggCGCAggcaacggagccGGGcgGCGCGGCGCc- -3' miRNA: 3'- aCGCAa-GCGU------------UCUaaCGCGUCGCGuu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 124928 | 0.66 | 0.917048 |
Target: 5'- cGCGUugaugugcuugaUCGCcGGGUUGCgaugaacGCGGCGCc- -3' miRNA: 3'- aCGCA------------AGCGuUCUAACG-------CGUCGCGuu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 113177 | 0.66 | 0.934512 |
Target: 5'- uUGCGUUCGUAAGGU--CGaCGGCGg-- -3' miRNA: 3'- -ACGCAAGCGUUCUAacGC-GUCGCguu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 112457 | 0.67 | 0.876897 |
Target: 5'- cGCGgcgGCAGGAUggGCGaCGGCGCc- -3' miRNA: 3'- aCGCaagCGUUCUAa-CGC-GUCGCGuu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 110712 | 0.67 | 0.884321 |
Target: 5'- cGCGUgCGCAAcGGUgUGCGCgcagAGCGCu- -3' miRNA: 3'- aCGCAaGCGUU-CUA-ACGCG----UCGCGuu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 102847 | 0.7 | 0.751074 |
Target: 5'- uUGCGUguaCGCuaacAAGAUUGCGCAaaGCGAg -3' miRNA: 3'- -ACGCAa--GCG----UUCUAACGCGUcgCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 100023 | 0.68 | 0.831043 |
Target: 5'- aGCGgugCGCAAGcacgcgguccgacgcGgcGCGCGGCGCGu -3' miRNA: 3'- aCGCaa-GCGUUC---------------UaaCGCGUCGCGUu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 98755 | 0.7 | 0.720213 |
Target: 5'- uUGUGUUuggcgcccuaagUGCAGGGUUGCuaGGCGCGGa -3' miRNA: 3'- -ACGCAA------------GCGUUCUAACGcgUCGCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 86875 | 0.68 | 0.861329 |
Target: 5'- uUGCGaUCGCAccGUUGCGguGCGa-- -3' miRNA: 3'- -ACGCaAGCGUucUAACGCguCGCguu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 83765 | 0.71 | 0.667246 |
Target: 5'- uUGCGUUUGUAcGAccGCaGCGGCGCAGu -3' miRNA: 3'- -ACGCAAGCGUuCUaaCG-CGUCGCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 78153 | 0.67 | 0.884321 |
Target: 5'- -aCGUUUGCAaauAGAUUGCGuCAcGCGCu- -3' miRNA: 3'- acGCAAGCGU---UCUAACGC-GU-CGCGuu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 76635 | 0.69 | 0.818543 |
Target: 5'- cGCGcuagcUUCGCu---UUGCGCGGCGCu- -3' miRNA: 3'- aCGC-----AAGCGuucuAACGCGUCGCGuu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 75584 | 0.66 | 0.923536 |
Target: 5'- gGCGgaCGCGGGcg-GCGCcguGCGCGu -3' miRNA: 3'- aCGCaaGCGUUCuaaCGCGu--CGCGUu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 74753 | 0.66 | 0.917651 |
Target: 5'- -cCGUU-GCAAcAUUGCGCGGUGCGg -3' miRNA: 3'- acGCAAgCGUUcUAACGCGUCGCGUu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 72094 | 0.68 | 0.844847 |
Target: 5'- cGCGUUucuggcgaacCGCAAGAUUGUGagcguuGUGCAAa -3' miRNA: 3'- aCGCAA----------GCGUUCUAACGCgu----CGCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 67299 | 0.72 | 0.635004 |
Target: 5'- aGCGUUUGUcucuGUUGCGCuGCGCAAu -3' miRNA: 3'- aCGCAAGCGuuc-UAACGCGuCGCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 63692 | 1.06 | 0.004749 |
Target: 5'- uUGCGUUCGCAAGAUUGCGCAGCGCAAc -3' miRNA: 3'- -ACGCAAGCGUUCUAACGCGUCGCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 61076 | 0.69 | 0.771088 |
Target: 5'- cGCGUauUCGUuuguggccGAcGGUUGCGUGGCGCAu -3' miRNA: 3'- aCGCA--AGCG--------UU-CUAACGCGUCGCGUu -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 58656 | 0.66 | 0.911503 |
Target: 5'- aGCGUgcaCGC-GGAgcgGCGCAgcucGCGCAAu -3' miRNA: 3'- aCGCAa--GCGuUCUaa-CGCGU----CGCGUU- -5' |
|||||||
22886 | 3' | -53.6 | NC_005137.2 | + | 51740 | 0.71 | 0.677943 |
Target: 5'- aUGCGUUaCGcCAAGAUUGUGCuGuUGCAAg -3' miRNA: 3'- -ACGCAA-GC-GUUCUAACGCGuC-GCGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home