miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 62543 1.11 0.003877
Target:  5'- uUGUCGCAACGGUCGACGAACCACUGCc -3'
miRNA:   3'- -ACAGCGUUGCCAGCUGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 63661 0.68 0.936671
Target:  5'- cGUCGCGcccGCGGUCacCGAACC-CgacGCg -3'
miRNA:   3'- aCAGCGU---UGCCAGcuGCUUGGuGa--CG- -5'
22887 3' -52.8 NC_005137.2 + 74639 0.71 0.817685
Target:  5'- -uUUGCGccaacaucGCGGUCGACGggUUACcGCg -3'
miRNA:   3'- acAGCGU--------UGCCAGCUGCuuGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 75963 0.67 0.944758
Target:  5'- uUGUCGUGACGcGgcgcgCGuuggugcacggcgcACGGGCCAUUGCc -3'
miRNA:   3'- -ACAGCGUUGC-Ca----GC--------------UGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 78629 0.66 0.974436
Target:  5'- aUGUCGCGGCccgucauGUCGGaGAAaaACUGCa -3'
miRNA:   3'- -ACAGCGUUGc------CAGCUgCUUggUGACG- -5'
22887 3' -52.8 NC_005137.2 + 78702 0.71 0.817685
Target:  5'- cGU-GCGACGGgUGGCaGAACgGCUGCg -3'
miRNA:   3'- aCAgCGUUGCCaGCUG-CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 79676 0.72 0.742271
Target:  5'- aGgCGCGGCGG-CgGACGAccCCGCUGCg -3'
miRNA:   3'- aCaGCGUUGCCaG-CUGCUu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 87182 0.67 0.958448
Target:  5'- -aUCGCGuucgACGGgCG-CGGGCgGCUGCu -3'
miRNA:   3'- acAGCGU----UGCCaGCuGCUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 88818 0.67 0.941515
Target:  5'- cGUCGCGuccCuGUCGGCGGACgcgaCGCUGg -3'
miRNA:   3'- aCAGCGUu--GcCAGCUGCUUG----GUGACg -5'
22887 3' -52.8 NC_005137.2 + 89526 0.67 0.950463
Target:  5'- --aCGCAAUuaGGUCaACGu-CCGCUGCg -3'
miRNA:   3'- acaGCGUUG--CCAGcUGCuuGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 94527 0.76 0.566686
Target:  5'- cGUUGUGACGGUUGACGGcACCguugacuuuuuuACUGCc -3'
miRNA:   3'- aCAGCGUUGCCAGCUGCU-UGG------------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 95478 0.66 0.968694
Target:  5'- gUGUUGCccACGGcCGGCcgGAACgAUUGCg -3'
miRNA:   3'- -ACAGCGu-UGCCaGCUG--CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 98384 0.68 0.9321
Target:  5'- cGUCGCGACGGgcuuuuuaucaacgGGCaGGACCuuuuucgaGCUGCa -3'
miRNA:   3'- aCAGCGUUGCCag------------CUG-CUUGG--------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 98455 0.66 0.977001
Target:  5'- cGUCGCuauuugucgGugGGUUGACuAACCuaacGCUGUu -3'
miRNA:   3'- aCAGCG---------UugCCAGCUGcUUGG----UGACG- -5'
22887 3' -52.8 NC_005137.2 + 99300 0.77 0.476663
Target:  5'- cUG-CGCuucAUGGUgGGCGGGCCGCUGCc -3'
miRNA:   3'- -ACaGCGu--UGCCAgCUGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 100211 0.66 0.972801
Target:  5'- gUGUUGCugguGCGcGUCGACGAcgacaaaaacucuauGCUAUauuUGCg -3'
miRNA:   3'- -ACAGCGu---UGC-CAGCUGCU---------------UGGUG---ACG- -5'
22887 3' -52.8 NC_005137.2 + 103809 0.66 0.97167
Target:  5'- aGUUGCugguguGCGG-CGGCGggUUGgUGCa -3'
miRNA:   3'- aCAGCGu-----UGCCaGCUGCuuGGUgACG- -5'
22887 3' -52.8 NC_005137.2 + 105055 0.67 0.941515
Target:  5'- gGUCuGCAAUGGggcUGuCGAACCAUUcGCg -3'
miRNA:   3'- aCAG-CGUUGCCa--GCuGCUUGGUGA-CG- -5'
22887 3' -52.8 NC_005137.2 + 108135 0.67 0.954575
Target:  5'- --cCGCAuccCGGUCGuCGGGCgGCgGCg -3'
miRNA:   3'- acaGCGUu--GCCAGCuGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 109026 0.66 0.973628
Target:  5'- cG-CGCGugGGUUGGCuAcagcaggacuuuacGCCACUGUc -3'
miRNA:   3'- aCaGCGUugCCAGCUGcU--------------UGGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.