miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 4236 0.67 0.950463
Target:  5'- -aUUGCGuCGGUCGGCGA--CACgUGCa -3'
miRNA:   3'- acAGCGUuGCCAGCUGCUugGUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 8556 0.66 0.965503
Target:  5'- aUGUgCGCu-CGGcCGACGGaguagaccGCgCGCUGCa -3'
miRNA:   3'- -ACA-GCGuuGCCaGCUGCU--------UG-GUGACG- -5'
22887 3' -52.8 NC_005137.2 + 14154 0.7 0.874658
Target:  5'- cGgaaGCAACGG-CGACGAGCaGCaGCa -3'
miRNA:   3'- aCag-CGUUGCCaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 18990 0.68 0.926239
Target:  5'- cGUCGCAGCGcGUC-ACGGuACguUUGCu -3'
miRNA:   3'- aCAGCGUUGC-CAGcUGCU-UGguGACG- -5'
22887 3' -52.8 NC_005137.2 + 21537 0.66 0.968694
Target:  5'- -aUCGUgauuaaaaaGugGGUCGACGAaacGCCGCguuggGUg -3'
miRNA:   3'- acAGCG---------UugCCAGCUGCU---UGGUGa----CG- -5'
22887 3' -52.8 NC_005137.2 + 21589 0.69 0.902389
Target:  5'- cG-CGCAuaggccGCGGUuuUGACGAGCCcgacggugucagGCUGCa -3'
miRNA:   3'- aCaGCGU------UGCCA--GCUGCUUGG------------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 23845 0.72 0.781092
Target:  5'- cGUCGCucagcuuuuGACGGUCGGCGucacccaacccGCCGCcGCc -3'
miRNA:   3'- aCAGCG---------UUGCCAGCUGCu----------UGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 24286 0.67 0.946111
Target:  5'- uUGggCGCAaucaaACGG-CGGCGuuuGCgGCUGCg -3'
miRNA:   3'- -ACa-GCGU-----UGCCaGCUGCu--UGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 25943 0.69 0.895812
Target:  5'- uUG-CGCAAUGGuUCGACagccCCAUUGCa -3'
miRNA:   3'- -ACaGCGUUGCC-AGCUGcuu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 26557 0.66 0.968694
Target:  5'- aGUCGUGGCGcugCGGCGuguCgACUGCc -3'
miRNA:   3'- aCAGCGUUGCca-GCUGCuu-GgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 26654 0.69 0.881942
Target:  5'- cGUCGCAGCGcGaacaCGACGAcgcACgCACgUGCg -3'
miRNA:   3'- aCAGCGUUGC-Ca---GCUGCU---UG-GUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 29186 0.75 0.629091
Target:  5'- gGUCGCAAcuuucCGGUgGACaaaguGCCGCUGCc -3'
miRNA:   3'- aCAGCGUU-----GCCAgCUGcu---UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 32175 0.73 0.690527
Target:  5'- aUGUUGCAacgcgaaaaaaacGCGGUCGGCGcACgGCgGCg -3'
miRNA:   3'- -ACAGCGU-------------UGCCAGCUGCuUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 32984 0.66 0.974436
Target:  5'- -cUCGCAGCGccCGACGuGCaCGCUGg -3'
miRNA:   3'- acAGCGUUGCcaGCUGCuUG-GUGACg -5'
22887 3' -52.8 NC_005137.2 + 34599 0.66 0.968694
Target:  5'- cGUCGCcgcgcggguAGCGGUCGGCGcggcuCCAUa-- -3'
miRNA:   3'- aCAGCG---------UUGCCAGCUGCuu---GGUGacg -5'
22887 3' -52.8 NC_005137.2 + 44220 0.69 0.902389
Target:  5'- -uUCGUAuGCGGcUCGGCucgGAAuCCACUGCa -3'
miRNA:   3'- acAGCGU-UGCC-AGCUG---CUU-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 46036 0.66 0.974436
Target:  5'- aUGUUuaAACGG-CGccaACGAgguuaugccGCCGCUGCa -3'
miRNA:   3'- -ACAGcgUUGCCaGC---UGCU---------UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 50812 0.67 0.958448
Target:  5'- cGUCGagccCGGUaGACGggUUugUGCg -3'
miRNA:   3'- aCAGCguu-GCCAgCUGCuuGGugACG- -5'
22887 3' -52.8 NC_005137.2 + 51282 0.66 0.97167
Target:  5'- cGUCGCAAUuugCGGCGGGCaGCgGCa -3'
miRNA:   3'- aCAGCGUUGccaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 57442 0.66 0.977001
Target:  5'- cGUCGCGuacgaauCGGUgGACGccgcgcaacgaGGCCACgacGCc -3'
miRNA:   3'- aCAGCGUu------GCCAgCUGC-----------UUGGUGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.