miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 46036 0.66 0.974436
Target:  5'- aUGUUuaAACGG-CGccaACGAgguuaugccGCCGCUGCa -3'
miRNA:   3'- -ACAGcgUUGCCaGC---UGCU---------UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 75963 0.67 0.944758
Target:  5'- uUGUCGUGACGcGgcgcgCGuuggugcacggcgcACGGGCCAUUGCc -3'
miRNA:   3'- -ACAGCGUUGC-Ca----GC--------------UGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 4236 0.67 0.950463
Target:  5'- -aUUGCGuCGGUCGGCGA--CACgUGCa -3'
miRNA:   3'- acAGCGUuGCCAGCUGCUugGUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 108135 0.67 0.954575
Target:  5'- --cCGCAuccCGGUCGuCGGGCgGCgGCg -3'
miRNA:   3'- acaGCGUu--GCCAGCuGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 110426 0.67 0.958448
Target:  5'- ---gGCAACGGgcgCGACGGugagcgugcacACCGCgGCc -3'
miRNA:   3'- acagCGUUGCCa--GCUGCU-----------UGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 50812 0.67 0.958448
Target:  5'- cGUCGagccCGGUaGACGggUUugUGCg -3'
miRNA:   3'- aCAGCguu-GCCAgCUGCuuGGugACG- -5'
22887 3' -52.8 NC_005137.2 + 124951 0.66 0.968694
Target:  5'- gGUUGCGAugaacgcggcgcCGGU-GAUGGGgCGCUGCg -3'
miRNA:   3'- aCAGCGUU------------GCCAgCUGCUUgGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 103809 0.66 0.97167
Target:  5'- aGUUGCugguguGCGG-CGGCGggUUGgUGCa -3'
miRNA:   3'- aCAGCGu-----UGCCaGCUGCuuGGUgACG- -5'
22887 3' -52.8 NC_005137.2 + 109026 0.66 0.973628
Target:  5'- cG-CGCGugGGUUGGCuAcagcaggacuuuacGCCACUGUc -3'
miRNA:   3'- aCaGCGUugCCAGCUGcU--------------UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 63661 0.68 0.936671
Target:  5'- cGUCGCGcccGCGGUCacCGAACC-CgacGCg -3'
miRNA:   3'- aCAGCGU---UGCCAGcuGCUUGGuGa--CG- -5'
22887 3' -52.8 NC_005137.2 + 98384 0.68 0.9321
Target:  5'- cGUCGCGACGGgcuuuuuaucaacgGGCaGGACCuuuuucgaGCUGCa -3'
miRNA:   3'- aCAGCGUUGCCag------------CUG-CUUGG--------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 130564 0.69 0.908722
Target:  5'- -uUCGgAGCGGUCgGACGuuGCCACcaGCg -3'
miRNA:   3'- acAGCgUUGCCAG-CUGCu-UGGUGa-CG- -5'
22887 3' -52.8 NC_005137.2 + 32175 0.73 0.690527
Target:  5'- aUGUUGCAacgcgaaaaaaacGCGGUCGGCGcACgGCgGCg -3'
miRNA:   3'- -ACAGCGU-------------UGCCAGCUGCuUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 79676 0.72 0.742271
Target:  5'- aGgCGCGGCGG-CgGACGAccCCGCUGCg -3'
miRNA:   3'- aCaGCGUUGCCaG-CUGCUu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 78702 0.71 0.817685
Target:  5'- cGU-GCGACGGgUGGCaGAACgGCUGCg -3'
miRNA:   3'- aCAgCGUUGCCaGCUG-CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 115231 0.7 0.873173
Target:  5'- aGUUGCGuuuuggugggaGGUCGACGAACaCAUgGCg -3'
miRNA:   3'- aCAGCGUug---------CCAGCUGCUUG-GUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 14154 0.7 0.874658
Target:  5'- cGgaaGCAACGG-CGACGAGCaGCaGCa -3'
miRNA:   3'- aCag-CGUUGCCaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 26654 0.69 0.881942
Target:  5'- cGUCGCAGCGcGaacaCGACGAcgcACgCACgUGCg -3'
miRNA:   3'- aCAGCGUUGC-Ca---GCUGCU---UG-GUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 25943 0.69 0.895812
Target:  5'- uUG-CGCAAUGGuUCGACagccCCAUUGCa -3'
miRNA:   3'- -ACaGCGUUGCC-AGCUGcuu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 44220 0.69 0.902389
Target:  5'- -uUCGUAuGCGGcUCGGCucgGAAuCCACUGCa -3'
miRNA:   3'- acAGCGU-UGCC-AGCUG---CUU-GGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.