miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 62543 1.11 0.003877
Target:  5'- uUGUCGCAACGGUCGACGAACCACUGCc -3'
miRNA:   3'- -ACAGCGUUGCCAGCUGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 99300 0.77 0.476663
Target:  5'- cUG-CGCuucAUGGUgGGCGGGCCGCUGCc -3'
miRNA:   3'- -ACaGCGu--UGCCAgCUGCUUGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 94527 0.76 0.566686
Target:  5'- cGUUGUGACGGUUGACGGcACCguugacuuuuuuACUGCc -3'
miRNA:   3'- aCAGCGUUGCCAGCUGCU-UGG------------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 29186 0.75 0.629091
Target:  5'- gGUCGCAAcuuucCGGUgGACaaaguGCCGCUGCc -3'
miRNA:   3'- aCAGCGUU-----GCCAgCUGcu---UGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 32175 0.73 0.690527
Target:  5'- aUGUUGCAacgcgaaaaaaacGCGGUCGGCGcACgGCgGCg -3'
miRNA:   3'- -ACAGCGU-------------UGCCAGCUGCuUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 79676 0.72 0.742271
Target:  5'- aGgCGCGGCGG-CgGACGAccCCGCUGCg -3'
miRNA:   3'- aCaGCGUUGCCaG-CUGCUu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 118927 0.72 0.752151
Target:  5'- -cUCGCAcuuGCGGUCGGCGAcgugauugccgACCgACUGg -3'
miRNA:   3'- acAGCGU---UGCCAGCUGCU-----------UGG-UGACg -5'
22887 3' -52.8 NC_005137.2 + 124219 0.72 0.761922
Target:  5'- uUGUCagGCAACGGacUUGACGAACcCAC-GCa -3'
miRNA:   3'- -ACAG--CGUUGCC--AGCUGCUUG-GUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 23845 0.72 0.781092
Target:  5'- cGUCGCucagcuuuuGACGGUCGGCGucacccaacccGCCGCcGCc -3'
miRNA:   3'- aCAGCG---------UUGCCAGCUGCu----------UGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 74639 0.71 0.817685
Target:  5'- -uUUGCGccaacaucGCGGUCGACGggUUACcGCg -3'
miRNA:   3'- acAGCGU--------UGCCAGCUGCuuGGUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 78702 0.71 0.817685
Target:  5'- cGU-GCGACGGgUGGCaGAACgGCUGCg -3'
miRNA:   3'- aCAgCGUUGCCaGCUG-CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 115231 0.7 0.873173
Target:  5'- aGUUGCGuuuuggugggaGGUCGACGAACaCAUgGCg -3'
miRNA:   3'- aCAGCGUug---------CCAGCUGCUUG-GUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 14154 0.7 0.874658
Target:  5'- cGgaaGCAACGG-CGACGAGCaGCaGCa -3'
miRNA:   3'- aCag-CGUUGCCaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 26654 0.69 0.881942
Target:  5'- cGUCGCAGCGcGaacaCGACGAcgcACgCACgUGCg -3'
miRNA:   3'- aCAGCGUUGC-Ca---GCUGCU---UG-GUG-ACG- -5'
22887 3' -52.8 NC_005137.2 + 25943 0.69 0.895812
Target:  5'- uUG-CGCAAUGGuUCGACagccCCAUUGCa -3'
miRNA:   3'- -ACaGCGUUGCC-AGCUGcuu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 44220 0.69 0.902389
Target:  5'- -uUCGUAuGCGGcUCGGCucgGAAuCCACUGCa -3'
miRNA:   3'- acAGCGU-UGCC-AGCUG---CUU-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 128699 0.69 0.902389
Target:  5'- aG-CGCGuuGCGGUCGAgGAACCcaaaacgaUGCa -3'
miRNA:   3'- aCaGCGU--UGCCAGCUgCUUGGug------ACG- -5'
22887 3' -52.8 NC_005137.2 + 21589 0.69 0.902389
Target:  5'- cG-CGCAuaggccGCGGUuuUGACGAGCCcgacggugucagGCUGCa -3'
miRNA:   3'- aCaGCGU------UGCCA--GCUGCUUGG------------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 130564 0.69 0.908722
Target:  5'- -uUCGgAGCGGUCgGACGuuGCCACcaGCg -3'
miRNA:   3'- acAGCgUUGCCAG-CUGCu-UGGUGa-CG- -5'
22887 3' -52.8 NC_005137.2 + 18990 0.68 0.926239
Target:  5'- cGUCGCAGCGcGUC-ACGGuACguUUGCu -3'
miRNA:   3'- aCAGCGUUGC-CAGcUGCU-UGguGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.