miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22887 3' -52.8 NC_005137.2 + 25943 0.69 0.895812
Target:  5'- uUG-CGCAAUGGuUCGACagccCCAUUGCa -3'
miRNA:   3'- -ACaGCGUUGCC-AGCUGcuu-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 44220 0.69 0.902389
Target:  5'- -uUCGUAuGCGGcUCGGCucgGAAuCCACUGCa -3'
miRNA:   3'- acAGCGU-UGCC-AGCUG---CUU-GGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 130564 0.69 0.908722
Target:  5'- -uUCGgAGCGGUCgGACGuuGCCACcaGCg -3'
miRNA:   3'- acAGCgUUGCCAG-CUGCu-UGGUGa-CG- -5'
22887 3' -52.8 NC_005137.2 + 89526 0.67 0.950463
Target:  5'- --aCGCAAUuaGGUCaACGu-CCGCUGCg -3'
miRNA:   3'- acaGCGUUG--CCAGcUGCuuGGUGACG- -5'
22887 3' -52.8 NC_005137.2 + 24286 0.67 0.946111
Target:  5'- uUGggCGCAaucaaACGG-CGGCGuuuGCgGCUGCg -3'
miRNA:   3'- -ACa-GCGU-----UGCCaGCUGCu--UGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 88818 0.67 0.941515
Target:  5'- cGUCGCGuccCuGUCGGCGGACgcgaCGCUGg -3'
miRNA:   3'- aCAGCGUu--GcCAGCUGCUUG----GUGACg -5'
22887 3' -52.8 NC_005137.2 + 105055 0.67 0.941515
Target:  5'- gGUCuGCAAUGGggcUGuCGAACCAUUcGCg -3'
miRNA:   3'- aCAG-CGUUGCCa--GCuGCUUGGUGA-CG- -5'
22887 3' -52.8 NC_005137.2 + 18990 0.68 0.926239
Target:  5'- cGUCGCAGCGcGUC-ACGGuACguUUGCu -3'
miRNA:   3'- aCAGCGUUGC-CAGcUGCU-UGguGACG- -5'
22887 3' -52.8 NC_005137.2 + 21589 0.69 0.902389
Target:  5'- cG-CGCAuaggccGCGGUuuUGACGAGCCcgacggugucagGCUGCa -3'
miRNA:   3'- aCaGCGU------UGCCA--GCUGCUUGG------------UGACG- -5'
22887 3' -52.8 NC_005137.2 + 128699 0.69 0.902389
Target:  5'- aG-CGCGuuGCGGUCGAgGAACCcaaaacgaUGCa -3'
miRNA:   3'- aCaGCGU--UGCCAGCUgCUUGGug------ACG- -5'
22887 3' -52.8 NC_005137.2 + 87182 0.67 0.958448
Target:  5'- -aUCGCGuucgACGGgCG-CGGGCgGCUGCu -3'
miRNA:   3'- acAGCGU----UGCCaGCuGCUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 8556 0.66 0.965503
Target:  5'- aUGUgCGCu-CGGcCGACGGaguagaccGCgCGCUGCa -3'
miRNA:   3'- -ACA-GCGuuGCCaGCUGCU--------UG-GUGACG- -5'
22887 3' -52.8 NC_005137.2 + 34599 0.66 0.968694
Target:  5'- cGUCGCcgcgcggguAGCGGUCGGCGcggcuCCAUa-- -3'
miRNA:   3'- aCAGCG---------UUGCCAGCUGCuu---GGUGacg -5'
22887 3' -52.8 NC_005137.2 + 26557 0.66 0.968694
Target:  5'- aGUCGUGGCGcugCGGCGuguCgACUGCc -3'
miRNA:   3'- aCAGCGUUGCca-GCUGCuu-GgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 95478 0.66 0.968694
Target:  5'- gUGUUGCccACGGcCGGCcgGAACgAUUGCg -3'
miRNA:   3'- -ACAGCGu-UGCCaGCUG--CUUGgUGACG- -5'
22887 3' -52.8 NC_005137.2 + 21537 0.66 0.968694
Target:  5'- -aUCGUgauuaaaaaGugGGUCGACGAaacGCCGCguuggGUg -3'
miRNA:   3'- acAGCG---------UugCCAGCUGCU---UGGUGa----CG- -5'
22887 3' -52.8 NC_005137.2 + 51282 0.66 0.97167
Target:  5'- cGUCGCAAUuugCGGCGGGCaGCgGCa -3'
miRNA:   3'- aCAGCGUUGccaGCUGCUUGgUGaCG- -5'
22887 3' -52.8 NC_005137.2 + 100211 0.66 0.972801
Target:  5'- gUGUUGCugguGCGcGUCGACGAcgacaaaaacucuauGCUAUauuUGCg -3'
miRNA:   3'- -ACAGCGu---UGC-CAGCUGCU---------------UGGUG---ACG- -5'
22887 3' -52.8 NC_005137.2 + 32984 0.66 0.974436
Target:  5'- -cUCGCAGCGccCGACGuGCaCGCUGg -3'
miRNA:   3'- acAGCGUUGCcaGCUGCuUG-GUGACg -5'
22887 3' -52.8 NC_005137.2 + 62543 1.11 0.003877
Target:  5'- uUGUCGCAACGGUCGACGAACCACUGCc -3'
miRNA:   3'- -ACAGCGUUGCCAGCUGCUUGGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.