miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 31028 0.66 0.773001
Target:  5'- cGUGCGCUgcuggcgcacgaagaGGCGCGCGgCCGCGgC-CGu -3'
miRNA:   3'- -CACGUGG---------------UUGCGCGC-GGCGCaGuGCu -5'
22888 3' -58.8 NC_005137.2 + 31193 0.66 0.777622
Target:  5'- -cGCaACCGGCcCGCGUCGCccuuguaccagcgGUCGCGGc -3'
miRNA:   3'- caCG-UGGUUGcGCGCGGCG-------------CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 31706 0.72 0.428262
Target:  5'- -cGCACCGACGUGUGCacguuCGCGUCGu-- -3'
miRNA:   3'- caCGUGGUUGCGCGCG-----GCGCAGUgcu -5'
22888 3' -58.8 NC_005137.2 + 31806 0.68 0.671544
Target:  5'- -cGCAgCGAUGCGgcggcccaaUGCCGCGUUACa- -3'
miRNA:   3'- caCGUgGUUGCGC---------GCGGCGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 33531 0.66 0.750407
Target:  5'- cGUGcCACC--UGCGCGa-GCGUCACGc -3'
miRNA:   3'- -CAC-GUGGuuGCGCGCggCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 33567 0.67 0.711506
Target:  5'- uGUGCcCCGACauguuuuugaGUGCGCCGCGcC-CGGu -3'
miRNA:   3'- -CACGuGGUUG----------CGCGCGGCGCaGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 34489 0.66 0.769281
Target:  5'- -cGCGUCAAuuUGCGCGCCGCuaGUCAUa- -3'
miRNA:   3'- caCGUGGUU--GCGCGCGGCG--CAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 34522 0.71 0.492373
Target:  5'- cGUGgACaCGACGCGCaCCGUGUUGCGu -3'
miRNA:   3'- -CACgUG-GUUGCGCGcGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 34678 0.69 0.580557
Target:  5'- -cGCACCAGCaaGCGCCGUggggucccguGUC-CGAu -3'
miRNA:   3'- caCGUGGUUGcgCGCGGCG----------CAGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 34708 0.71 0.482932
Target:  5'- -cGCGCCGGCGUGUcggcgaauGCaCGCGUC-CGAg -3'
miRNA:   3'- caCGUGGUUGCGCG--------CG-GCGCAGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 39804 0.68 0.661454
Target:  5'- -gGCgGCCAacACGCGUgcaaccaaacGCCGCGcCACGGa -3'
miRNA:   3'- caCG-UGGU--UGCGCG----------CGGCGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 43675 0.68 0.641211
Target:  5'- aUGCgguugGCCAGC-UGCGCCGUuUCGCGAc -3'
miRNA:   3'- cACG-----UGGUUGcGCGCGGCGcAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 43850 0.7 0.530933
Target:  5'- uUGCACguGCGaaaCGCCGCGgaUCGCGAg -3'
miRNA:   3'- cACGUGguUGCgc-GCGGCGC--AGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 45099 0.7 0.510538
Target:  5'- uUGCucuGCCAcucgcggGCGCGCGaCGCGUCGCa- -3'
miRNA:   3'- cACG---UGGU-------UGCGCGCgGCGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 45665 0.67 0.681603
Target:  5'- cGUGUacACCAACGUGgGCgGCGgcgccaaCGCGGa -3'
miRNA:   3'- -CACG--UGGUUGCGCgCGgCGCa------GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 46070 0.7 0.521182
Target:  5'- cUGCA-CAGCGUGCGCCGCuauUUugGAc -3'
miRNA:   3'- cACGUgGUUGCGCGCGGCGc--AGugCU- -5'
22888 3' -58.8 NC_005137.2 + 49401 0.66 0.778543
Target:  5'- uGUGCACgAcccugcuuAC-UGCuGCCGCGUCACGc -3'
miRNA:   3'- -CACGUGgU--------UGcGCG-CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 51702 0.66 0.750407
Target:  5'- -gGCACCGuuGCGCGCGUCggaaGCG-CAUGu -3'
miRNA:   3'- caCGUGGU--UGCGCGCGG----CGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 55038 1.08 0.001536
Target:  5'- cGUGCACCAACGCGCGCCGCGUCACGAc -3'
miRNA:   3'- -CACGUGGUUGCGCGCGGCGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 55422 0.66 0.769281
Target:  5'- -cGCGCaCGGCGcCGC-CCGCGUC-CGc -3'
miRNA:   3'- caCGUG-GUUGC-GCGcGGCGCAGuGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.