miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 4502 0.68 0.631076
Target:  5'- -gGCAcCCAACGCGCGuuGCcuauUCACc- -3'
miRNA:   3'- caCGU-GGUUGCGCGCggCGc---AGUGcu -5'
22888 3' -58.8 NC_005137.2 + 7011 0.7 0.540749
Target:  5'- -gGCACaaCGugGCGCaCgCGCGUCACGGc -3'
miRNA:   3'- caCGUG--GUugCGCGcG-GCGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 7942 0.66 0.740812
Target:  5'- --uCACCAAggcUGCGCGCCGCGaccuCGAc -3'
miRNA:   3'- cacGUGGUU---GCGCGCGGCGCagu-GCU- -5'
22888 3' -58.8 NC_005137.2 + 10719 0.69 0.610815
Target:  5'- cGUGCACCGcauCGCGCaCGCGUCGg-- -3'
miRNA:   3'- -CACGUGGUugcGCGCG-GCGCAGUgcu -5'
22888 3' -58.8 NC_005137.2 + 11317 0.67 0.701593
Target:  5'- cGUGCuaaGCUguguGCGCGCGCCGUGcCuguuuCGAg -3'
miRNA:   3'- -CACG---UGGu---UGCGCGCGGCGCaGu----GCU- -5'
22888 3' -58.8 NC_005137.2 + 11437 0.67 0.711506
Target:  5'- cGUGC-UCAGCGUGCGUCGC-UCuacCGAg -3'
miRNA:   3'- -CACGuGGUUGCGCGCGGCGcAGu--GCU- -5'
22888 3' -58.8 NC_005137.2 + 15736 0.67 0.691622
Target:  5'- cUGCucGCCAAgguCGCgGCGCCaGCGUCGCc- -3'
miRNA:   3'- cACG--UGGUU---GCG-CGCGG-CGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 18548 0.66 0.750407
Target:  5'- -gGCGCCGuCGCccauccugcCGCCGCGUCcaACGGc -3'
miRNA:   3'- caCGUGGUuGCGc--------GCGGCGCAG--UGCU- -5'
22888 3' -58.8 NC_005137.2 + 18567 0.68 0.671544
Target:  5'- cGUGUugCGAC-CGCGCCGUuUCaauuGCGAg -3'
miRNA:   3'- -CACGugGUUGcGCGCGGCGcAG----UGCU- -5'
22888 3' -58.8 NC_005137.2 + 18601 0.78 0.173773
Target:  5'- uUGCACaAugGCGCGCCGUG-CGCGAu -3'
miRNA:   3'- cACGUGgUugCGCGCGGCGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 20965 0.66 0.769281
Target:  5'- cUGcCugCGGCGCGCguuuuGCCGCGcuugCACGc -3'
miRNA:   3'- cAC-GugGUUGCGCG-----CGGCGCa---GUGCu -5'
22888 3' -58.8 NC_005137.2 + 22399 0.74 0.30913
Target:  5'- -cGCACCGGCaacaugGCGCGCCugacgcugcggaGCGUCACGu -3'
miRNA:   3'- caCGUGGUUG------CGCGCGG------------CGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 22419 0.71 0.491425
Target:  5'- -cGCACCAcguaaaagcacacGgGCGCGCCGCcgaUCACGu -3'
miRNA:   3'- caCGUGGU-------------UgCGCGCGGCGc--AGUGCu -5'
22888 3' -58.8 NC_005137.2 + 22895 0.66 0.740812
Target:  5'- gGUGCugCGAUcgGCGCGCaaCGCGUacCACa- -3'
miRNA:   3'- -CACGugGUUG--CGCGCG--GCGCA--GUGcu -5'
22888 3' -58.8 NC_005137.2 + 24678 0.66 0.769281
Target:  5'- uUGcCGCCAcCGC-CGUCGUgGUCACGAc -3'
miRNA:   3'- cAC-GUGGUuGCGcGCGGCG-CAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 26548 0.67 0.731124
Target:  5'- cGUGCAacaagUCGugGCGCuGCgGCGUguCGAc -3'
miRNA:   3'- -CACGU-----GGUugCGCG-CGgCGCAguGCU- -5'
22888 3' -58.8 NC_005137.2 + 27189 0.69 0.610815
Target:  5'- cGUGCACCAACcCGcCGCCGCa-CACc- -3'
miRNA:   3'- -CACGUGGUUGcGC-GCGGCGcaGUGcu -5'
22888 3' -58.8 NC_005137.2 + 30745 0.74 0.338266
Target:  5'- aUGC-CgCGACGCGCGCCcguGCGUUGCGGc -3'
miRNA:   3'- cACGuG-GUUGCGCGCGG---CGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 30931 0.8 0.131489
Target:  5'- -aGCACguGCGCGCGCCGCGgCACa- -3'
miRNA:   3'- caCGUGguUGCGCGCGGCGCaGUGcu -5'
22888 3' -58.8 NC_005137.2 + 30967 0.73 0.377419
Target:  5'- -cGCGCC---GCGCGCCGCGUCG-GAc -3'
miRNA:   3'- caCGUGGuugCGCGCGGCGCAGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.