miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 55038 1.08 0.001536
Target:  5'- cGUGCACCAACGCGCGCCGCGUCACGAc -3'
miRNA:   3'- -CACGUGGUUGCGCGCGGCGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 30931 0.8 0.131489
Target:  5'- -aGCACguGCGCGCGCCGCGgCACa- -3'
miRNA:   3'- caCGUGguUGCGCGCGGCGCaGUGcu -5'
22888 3' -58.8 NC_005137.2 + 102957 0.8 0.141976
Target:  5'- -cGCAucCCAGCGCGCGUCGCGcCACGu -3'
miRNA:   3'- caCGU--GGUUGCGCGCGGCGCaGUGCu -5'
22888 3' -58.8 NC_005137.2 + 18601 0.78 0.173773
Target:  5'- uUGCACaAugGCGCGCCGUG-CGCGAu -3'
miRNA:   3'- cACGUGgUugCGCGCGGCGCaGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 116262 0.78 0.18266
Target:  5'- --uUugCAACGCGUGCUGCGUCACGu -3'
miRNA:   3'- cacGugGUUGCGCGCGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 100264 0.78 0.196744
Target:  5'- -cGCACgGGCGCGCGUCGCGgcauUCACGc -3'
miRNA:   3'- caCGUGgUUGCGCGCGGCGC----AGUGCu -5'
22888 3' -58.8 NC_005137.2 + 96423 0.76 0.233322
Target:  5'- -cGCGgCGACGCGCccGCCGCGUUGCGu -3'
miRNA:   3'- caCGUgGUUGCGCG--CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 88806 0.76 0.250081
Target:  5'- -cGUugUAGCGCGCGUCGCGUCccugucgGCGGa -3'
miRNA:   3'- caCGugGUUGCGCGCGGCGCAG-------UGCU- -5'
22888 3' -58.8 NC_005137.2 + 22399 0.74 0.30913
Target:  5'- -cGCACCGGCaacaugGCGCGCCugacgcugcggaGCGUCACGu -3'
miRNA:   3'- caCGUGGUUG------CGCGCGG------------CGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 30745 0.74 0.338266
Target:  5'- aUGC-CgCGACGCGCGCCcguGCGUUGCGGc -3'
miRNA:   3'- cACGuG-GUUGCGCGCGG---CGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 30967 0.73 0.377419
Target:  5'- -cGCGCC---GCGCGCCGCGUCG-GAc -3'
miRNA:   3'- caCGUGGuugCGCGCGGCGCAGUgCU- -5'
22888 3' -58.8 NC_005137.2 + 99609 0.72 0.419508
Target:  5'- uUGUugCaAACGCGCGCCGCGcCAa-- -3'
miRNA:   3'- cACGugG-UUGCGCGCGGCGCaGUgcu -5'
22888 3' -58.8 NC_005137.2 + 31706 0.72 0.428262
Target:  5'- -cGCACCGACGUGUGCacguuCGCGUCGu-- -3'
miRNA:   3'- caCGUGGUUGCGCGCG-----GCGCAGUgcu -5'
22888 3' -58.8 NC_005137.2 + 92351 0.72 0.428262
Target:  5'- uGUGC-CgCAACGCGCGCCugcccaGCGUCgauuACGAc -3'
miRNA:   3'- -CACGuG-GUUGCGCGCGG------CGCAG----UGCU- -5'
22888 3' -58.8 NC_005137.2 + 78940 0.71 0.455154
Target:  5'- cGUGCGaCAACGCGUuUCGCGUCAUGc -3'
miRNA:   3'- -CACGUgGUUGCGCGcGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 120279 0.71 0.47358
Target:  5'- aGUGCugGCCGACGCGUGCgcgaUGCGgugCACGc -3'
miRNA:   3'- -CACG--UGGUUGCGCGCG----GCGCa--GUGCu -5'
22888 3' -58.8 NC_005137.2 + 34708 0.71 0.482932
Target:  5'- -cGCGCCGGCGUGUcggcgaauGCaCGCGUC-CGAg -3'
miRNA:   3'- caCGUGGUUGCGCG--------CG-GCGCAGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 22419 0.71 0.491425
Target:  5'- -cGCACCAcguaaaagcacacGgGCGCGCCGCcgaUCACGu -3'
miRNA:   3'- caCGUGGU-------------UgCGCGCGGCGc--AGUGCu -5'
22888 3' -58.8 NC_005137.2 + 82222 0.71 0.492373
Target:  5'- -aGUGCCGcacACGCugugcgGCGCCGCGUCcaACGAu -3'
miRNA:   3'- caCGUGGU---UGCG------CGCGGCGCAG--UGCU- -5'
22888 3' -58.8 NC_005137.2 + 34522 0.71 0.492373
Target:  5'- cGUGgACaCGACGCGCaCCGUGUUGCGu -3'
miRNA:   3'- -CACgUG-GUUGCGCGcGGCGCAGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.