miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22888 3' -58.8 NC_005137.2 + 61115 0.68 0.624994
Target:  5'- -cGCACCAACGcCGCGUucguguuggugcaaaCGuCGUCGCa- -3'
miRNA:   3'- caCGUGGUUGC-GCGCG---------------GC-GCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 110552 0.7 0.529955
Target:  5'- gGUGCccGCCGAUGUGCGCCcgcaccuGCGUCuuGGc -3'
miRNA:   3'- -CACG--UGGUUGCGCGCGG-------CGCAGugCU- -5'
22888 3' -58.8 NC_005137.2 + 43850 0.7 0.530933
Target:  5'- uUGCACguGCGaaaCGCCGCGgaUCGCGAg -3'
miRNA:   3'- cACGUGguUGCgc-GCGGCGC--AGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 79584 0.7 0.530933
Target:  5'- -cGCGCCGcCGUGCGauaGCGUCGCa- -3'
miRNA:   3'- caCGUGGUuGCGCGCgg-CGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 7011 0.7 0.540749
Target:  5'- -gGCACaaCGugGCGCaCgCGCGUCACGGc -3'
miRNA:   3'- caCGUG--GUugCGCGcG-GCGCAGUGCU- -5'
22888 3' -58.8 NC_005137.2 + 34678 0.69 0.580557
Target:  5'- -cGCACCAGCaaGCGCCGUggggucccguGUC-CGAu -3'
miRNA:   3'- caCGUGGUUGcgCGCGGCG----------CAGuGCU- -5'
22888 3' -58.8 NC_005137.2 + 63640 0.69 0.600704
Target:  5'- -cGCGgCGACGguCGCGCauCGCGUCGCGc -3'
miRNA:   3'- caCGUgGUUGC--GCGCG--GCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 10719 0.69 0.610815
Target:  5'- cGUGCACCGcauCGCGCaCGCGUCGg-- -3'
miRNA:   3'- -CACGUGGUugcGCGCG-GCGCAGUgcu -5'
22888 3' -58.8 NC_005137.2 + 67552 0.68 0.620941
Target:  5'- -gGCACaAACGCGCGCCGa---GCGGg -3'
miRNA:   3'- caCGUGgUUGCGCGCGGCgcagUGCU- -5'
22888 3' -58.8 NC_005137.2 + 100051 0.7 0.528001
Target:  5'- -gGCGCgCGGCGCGUucagcaugcuuuguGCCGCGgcgCGCGGc -3'
miRNA:   3'- caCGUG-GUUGCGCG--------------CGGCGCa--GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 57421 0.7 0.521182
Target:  5'- uUGCGCCGGCuGCaaaGCCGuCGUCGCGu -3'
miRNA:   3'- cACGUGGUUG-CGcg-CGGC-GCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 46070 0.7 0.521182
Target:  5'- cUGCA-CAGCGUGCGCCGCuauUUugGAc -3'
miRNA:   3'- cACGUgGUUGCGCGCGGCGc--AGugCU- -5'
22888 3' -58.8 NC_005137.2 + 100264 0.78 0.196744
Target:  5'- -cGCACgGGCGCGCGUCGCGgcauUCACGc -3'
miRNA:   3'- caCGUGgUUGCGCGCGGCGC----AGUGCu -5'
22888 3' -58.8 NC_005137.2 + 96423 0.76 0.233322
Target:  5'- -cGCGgCGACGCGCccGCCGCGUUGCGu -3'
miRNA:   3'- caCGUgGUUGCGCG--CGGCGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 22399 0.74 0.30913
Target:  5'- -cGCACCGGCaacaugGCGCGCCugacgcugcggaGCGUCACGu -3'
miRNA:   3'- caCGUGGUUG------CGCGCGG------------CGCAGUGCu -5'
22888 3' -58.8 NC_005137.2 + 99609 0.72 0.419508
Target:  5'- uUGUugCaAACGCGCGCCGCGcCAa-- -3'
miRNA:   3'- cACGugG-UUGCGCGCGGCGCaGUgcu -5'
22888 3' -58.8 NC_005137.2 + 31706 0.72 0.428262
Target:  5'- -cGCACCGACGUGUGCacguuCGCGUCGu-- -3'
miRNA:   3'- caCGUGGUUGCGCGCG-----GCGCAGUgcu -5'
22888 3' -58.8 NC_005137.2 + 96483 0.71 0.492373
Target:  5'- -cGCAacaCggUGCGCGUCGUGUcCACGGg -3'
miRNA:   3'- caCGUg--GuuGCGCGCGGCGCA-GUGCU- -5'
22888 3' -58.8 NC_005137.2 + 45099 0.7 0.510538
Target:  5'- uUGCucuGCCAcucgcggGCGCGCGaCGCGUCGCa- -3'
miRNA:   3'- cACG---UGGU-------UGCGCGCgGCGCAGUGcu -5'
22888 3' -58.8 NC_005137.2 + 117561 0.7 0.511503
Target:  5'- gGUGUACCGGCaaaGUGCGCCGCcggUGCGGc -3'
miRNA:   3'- -CACGUGGUUG---CGCGCGGCGca-GUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.