miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 33018 0.78 0.286392
Target:  5'- cGGGCGCAcccacGCCGCGCGcCCGUUUugCCu -3'
miRNA:   3'- -UUUGCGU-----UGGCGCGUcGGCAAGugGG- -5'
22890 3' -55.7 NC_005137.2 + 33247 0.7 0.659607
Target:  5'- --uCGCAGCgaGCGCcuGGCUGUUCgagGCCCg -3'
miRNA:   3'- uuuGCGUUGg-CGCG--UCGGCAAG---UGGG- -5'
22890 3' -55.7 NC_005137.2 + 34579 0.67 0.833748
Target:  5'- cAAACGCAACgCG-GCGGgCGcgUCGCCg -3'
miRNA:   3'- -UUUGCGUUG-GCgCGUCgGCa-AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 35519 0.67 0.850254
Target:  5'- cGAUGCGcCCGUGCGGC-GcgCAUCCg -3'
miRNA:   3'- uUUGCGUuGGCGCGUCGgCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 37543 0.66 0.873461
Target:  5'- cGGCGCuGgCGCGCA-CCGU--GCCCg -3'
miRNA:   3'- uUUGCGuUgGCGCGUcGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 41471 0.66 0.887823
Target:  5'- -cGCGCuguCCGCaGCGGaCGUUgACCUa -3'
miRNA:   3'- uuUGCGuu-GGCG-CGUCgGCAAgUGGG- -5'
22890 3' -55.7 NC_005137.2 + 43809 0.7 0.690631
Target:  5'- ---aGCGACgGCacgaGCAGCCGcccgCGCCCg -3'
miRNA:   3'- uuugCGUUGgCG----CGUCGGCaa--GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 48890 0.67 0.833748
Target:  5'- --cUGC-GCCGCGCuGCgGcUUCGCCUg -3'
miRNA:   3'- uuuGCGuUGGCGCGuCGgC-AAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 50778 1.08 0.002582
Target:  5'- cAAACGCAACCGCGCAGCCGUUCACCCc -3'
miRNA:   3'- -UUUGCGUUGGCGCGUCGGCAAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 51841 0.67 0.825205
Target:  5'- aAGACuGCAGCCGCaGCAGUacgUUACCa -3'
miRNA:   3'- -UUUG-CGUUGGCG-CGUCGgcaAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 52283 0.8 0.208236
Target:  5'- -cGCGCAcuuaucGCCGaagcCGCAGCCGUUCugCCa -3'
miRNA:   3'- uuUGCGU------UGGC----GCGUCGGCAAGugGG- -5'
22890 3' -55.7 NC_005137.2 + 55017 0.68 0.789303
Target:  5'- uGGugGCAAuggcCCGUGC-GCCGUgCACCa -3'
miRNA:   3'- -UUugCGUU----GGCGCGuCGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 56876 0.69 0.721201
Target:  5'- uAAAUGCAACCGUGCcguGCCGgcgcgaaaGCCa -3'
miRNA:   3'- -UUUGCGUUGGCGCGu--CGGCaag-----UGGg -5'
22890 3' -55.7 NC_005137.2 + 60411 0.66 0.894656
Target:  5'- cAGCGCAAcaaaaagccgcCCGCGCAGCaCGaaCGCa- -3'
miRNA:   3'- uUUGCGUU-----------GGCGCGUCG-GCaaGUGgg -5'
22890 3' -55.7 NC_005137.2 + 60971 0.67 0.850254
Target:  5'- gGGGCGCAccacguaCGCGguGCCGUgggaUugCCg -3'
miRNA:   3'- -UUUGCGUug-----GCGCguCGGCAa---GugGG- -5'
22890 3' -55.7 NC_005137.2 + 61742 0.78 0.266506
Target:  5'- --cCGCGACCGCGCAcGCCGUccaguuUCauaGCCCa -3'
miRNA:   3'- uuuGCGUUGGCGCGU-CGGCA------AG---UGGG- -5'
22890 3' -55.7 NC_005137.2 + 63777 0.67 0.850254
Target:  5'- --cCGUAgaACCGUGCgaaGGUCGcgCGCCCg -3'
miRNA:   3'- uuuGCGU--UGGCGCG---UCGGCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 66697 0.69 0.741201
Target:  5'- ---gGCAAauUgGCGCAGCgCGcgUCACCCg -3'
miRNA:   3'- uuugCGUU--GgCGCGUCG-GCa-AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 67360 0.66 0.865941
Target:  5'- cGGGCGCGACgcgaUGCGCGaCCGU-CGCCg -3'
miRNA:   3'- -UUUGCGUUG----GCGCGUcGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 73596 0.68 0.798521
Target:  5'- --uUGCAGCCgGCGCaacgaAGUCGUUUGCCa -3'
miRNA:   3'- uuuGCGUUGG-CGCG-----UCGGCAAGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.