miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 3468 0.71 0.607555
Target:  5'- gAAACGCAACCucaGCGCGGCCGa-CAUUg -3'
miRNA:   3'- -UUUGCGUUGG---CGCGUCGGCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 5883 0.71 0.628376
Target:  5'- aAGACGUucgAGCgGCGCGGCCcGccgcuugaguuaUUCACCCg -3'
miRNA:   3'- -UUUGCG---UUGgCGCGUCGG-C------------AAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 7188 0.67 0.816481
Target:  5'- cAGCGCAuuucgaACCgGCGCGuGCCGUcuuccaauaacUCAUCCc -3'
miRNA:   3'- uUUGCGU------UGG-CGCGU-CGGCA-----------AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 8056 0.68 0.770436
Target:  5'- --uUGCAACCGCGCAacGCCuUUUauacuuGCCCc -3'
miRNA:   3'- uuuGCGUUGGCGCGU--CGGcAAG------UGGG- -5'
22890 3' -55.7 NC_005137.2 + 9226 0.72 0.576486
Target:  5'- uAGCGCAACaaGUGCcGCCGgcaCACCCa -3'
miRNA:   3'- uUUGCGUUGg-CGCGuCGGCaa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 11143 0.66 0.880757
Target:  5'- aAAACGUuuguuGGCUGCGCGuGCCaccaCGCCCg -3'
miRNA:   3'- -UUUGCG-----UUGGCGCGU-CGGcaa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 12413 0.66 0.885727
Target:  5'- uGGACGCAGCUaaaguuuuggcaauGCGCAGuCCGUgaucaggCGCUUu -3'
miRNA:   3'- -UUUGCGUUGG--------------CGCGUC-GGCAa------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 13158 0.66 0.894656
Target:  5'- cGGACGCGuCCGUGCuGGUgGUU-GCCCc -3'
miRNA:   3'- -UUUGCGUuGGCGCG-UCGgCAAgUGGG- -5'
22890 3' -55.7 NC_005137.2 + 13705 0.69 0.711077
Target:  5'- uGGGCGCGACCGCGUuguuGCUauuUUUugCCg -3'
miRNA:   3'- -UUUGCGUUGGCGCGu---CGGc--AAGugGG- -5'
22890 3' -55.7 NC_005137.2 + 15710 0.71 0.606516
Target:  5'- cGGCGCAAUCGCccGCAGCuCGUccgcugcUCGCCa -3'
miRNA:   3'- uUUGCGUUGGCG--CGUCG-GCA-------AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 20563 0.69 0.731245
Target:  5'- -cGCGcCGGCCGCGguGugcacgcucaCCGUcgCGCCCg -3'
miRNA:   3'- uuUGC-GUUGGCGCguC----------GGCAa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 22855 0.71 0.628376
Target:  5'- -cGCGCAuACCGaCGCcGCCGc-CGCCCg -3'
miRNA:   3'- uuUGCGU-UGGC-GCGuCGGCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 25484 0.71 0.638795
Target:  5'- aAAACGguGCCa-GCAGCCGUguggCGCCg -3'
miRNA:   3'- -UUUGCguUGGcgCGUCGGCAa---GUGGg -5'
22890 3' -55.7 NC_005137.2 + 28050 0.66 0.861324
Target:  5'- uGGCGCGACgCGCGCugggaugcgccagacGGCUGUaCACgCa -3'
miRNA:   3'- uUUGCGUUG-GCGCG---------------UCGGCAaGUGgG- -5'
22890 3' -55.7 NC_005137.2 + 30963 0.69 0.711077
Target:  5'- uGAACGC-GCCGCGC-GCCGcgUCGgaCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGuCGGCa-AGUg-GG- -5'
22890 3' -55.7 NC_005137.2 + 30984 0.66 0.880757
Target:  5'- cGAAUGCcgggucgucccAACCGCGCAcGCUGgucggCGCCg -3'
miRNA:   3'- -UUUGCG-----------UUGGCGCGU-CGGCaa---GUGGg -5'
22890 3' -55.7 NC_005137.2 + 31053 0.71 0.628376
Target:  5'- -cGCGCGGCCGCG--GCCGUUguCCa -3'
miRNA:   3'- uuUGCGUUGGCGCguCGGCAAguGGg -5'
22890 3' -55.7 NC_005137.2 + 31190 0.69 0.741201
Target:  5'- cGGCGCAACCG-GC--CCGcgUCGCCCu -3'
miRNA:   3'- uUUGCGUUGGCgCGucGGCa-AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 31677 0.67 0.816481
Target:  5'- cGGACGaCAccGCCGCGUGGuuGUgcggUCGCaCCg -3'
miRNA:   3'- -UUUGC-GU--UGGCGCGUCggCA----AGUG-GG- -5'
22890 3' -55.7 NC_005137.2 + 32470 0.67 0.825205
Target:  5'- aAAACGCAGCauCGCGcCAGCaauuuGUUaACCCa -3'
miRNA:   3'- -UUUGCGUUG--GCGC-GUCGg----CAAgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.